Scaffold Ga0209819_10000253

Overview

Basic Information

• Taxon OID: 3300027722
• Scaffold ID: Ga0209819_10000253
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15205
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004295	Metagenome / Metatranscriptome	445	Y
F004741	Metagenome / Metatranscriptome	425	Y
F015782	Metagenome	252	Y
F049754	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209819_1000025317	F015782	GGA	MTRYKEHPIYGVAVPAPENRWYSRGLVFDRDLNQTIEIKRLESKRRIFKTKKQAEQHGLDLCKAWVDKQPSNTQHTIL
Ga0209819_1000025322	F004295	AGGAGG	MFVENYRLDTMIGGRAQNVIPYPKISDDDWQKWKAFLPVKSALLYKKVLLHNSKNFLHTAYGIPPDVCDEMVRGASHFEEIEVWGKREIRKDPIAVGLTGNGERYLICRWGMDKLIPFERIKQRSWLYHIQNFSVMLLTSEKFWLTGAAATLLAMAQIGT
Ga0209819_1000025324	F004741	N/A	VKILIDIAPEYYDRLLSEFTEESRIYAILKNGVVIHHFEAGDESRTVEILCDKFHARMILAAAEIVCPEAAPEIEEAIRLSRTLH
Ga0209819_100002533	F049754	N/A	MAPESVWPGIFQAEQGRGTASARSTRDATSATVASYAISDEEGARKNGLDNRQ