Scaffold Ga0209492_1001212

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1001212
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7986
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031852	Metagenome	181	Y
F050987	Metagenome / Metatranscriptome	144	Y
F071989	Metagenome	121	N
F085232	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_100121211	F050987	N/A	MKAHTTIVDVLMDINTPQAAKKFVVITDHENTFYFSYPGEDEFEAMRGQAFLTRTFIPFSINVNQEVGSHFIYKWDTMNEVVNHFDLLFNS
Ga0209492_10012122	F085232	N/A	MVTLFKAKKEIKRPGDLTPKGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKKN
Ga0209492_100121221	F071989	N/A	MNRAMIGQESMSVIERLAALCATPGIDDKTKEIANKQIQELLNGPVHTSVVELKTAAAGIVTLT
Ga0209492_10012123	F031852	N/A	MTGHFYFSTMEVYLGKQAKSLFYGRDIPIDSIGVFQSHVGEWLYWFNDGWTYDTGFADTEVEAMETAKRNFKARKKENDGNTI