Scaffold Ga0209492_1000070

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1000070
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33220
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F021112	Metagenome	220	Y
F033806	Metagenome	176	N
F047674	Metagenome / Metatranscriptome	149	Y
F070118	Metagenome	123	N
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_100007015	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESRRFDTKRAREILPAQVIEALEIVSTSRRFSIVNEDN
Ga0209492_100007019	F033806	AGG	MNLDQFKQPRDPLFSVHTHSDGSIALYLEEQDAVKDLVQDVVGAYPLDDLDLLRHSADRSVKSENYFEHLDNARDNLSENAPLLCNMTEKEALILAEDLIRAVKFARISREAGTNYPSLKAVK
Ga0209492_10000702	F047674	GGA	MDTETIQEIDEALLHAINTRANTIDSKKHIVDKFIDDLLDSRLELTRC
Ga0209492_100007024	F020909	GGAG	MITKRGKRVRAVAIAVGIILIWQVASNLWWVGIDAPSAEFLGWCWGSMSECVVL
Ga0209492_10000703	F021112	AGGCGG	MWLTTIPNLQVMAGDYITPGRSGSGTVSAERSIGVNVNALDYSMAIELLGILHSWESEIRSARQLTPPALLKKQPTTALEVETACVFQLAHLDWTLGQEWAADFYNEIKEQYAKGMAAAKQFVEQPRRIPCPTDECGKYVVIDAENLMSDVSCFGCKQSWTVLRLVALAMSNPNRKFFLDVEAIALWLGISQRQVHKIIKANGIAKNGKMYDLAAVIANR
Ga0209492_100007031	F000368	GGAG	MEQFKQITLTWFRAAAAAAIALYLAGETDLKTLGMAAIAGAAGPILKWLDSSAVDFGRGS
Ga0209492_100007036	F077306	N/A	MPAFDGTTSPSVAVQFLKSGTWTSVTTTDVIQIDIRRGRTRQNERDQAGISVVVLNNTSGFYDPDNTSGSNPWVVGGVSILRDGLQMRIVATIGGTSYNLYYGFLEETQVNLDIVSSVTMTFVDGIAYIADAQAPALATAGFAETAATRVGRILTNYVGWTGSTSLTGTVGMLATVQNRSCMALIYQAVDAIAGRFYISRSGVATLVPLADKFSRPTQLLFTDTQASNTVGYMQLLTNPGTYFVVNQAVVDRTNTTKQYTSRYNPSVSAYGIAKTVIDAPVATDSNAQNLALYESRKLAEPLTYVERIDFNALALSTYGALYPDFLATELSDQVSVVRSGRQWNLVVEGMAHTITQNNWVCSYTTSAINPYSITI
Ga0209492_10000704	F070118	AGGA	MSELDFKPISCKKCGNLIWAGVSASSRCDVKLDTARLNLVQEVLALTSGLGTYQVHRTAVSFEATRRTAGRMTAADPIVLATHTCRALTVFAEEAPDYFNRVKLSTTSEKVPF