Scaffold Ga0209617_10027723

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10027723
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F004431	Metagenome / Metatranscriptome	438	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006744	Metagenome / Metatranscriptome	365	Y
F009143	Metagenome / Metatranscriptome	322	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1002772311	F009143	GAGG	MMTKWDTIQADVADAYVYLEEEEAYNKALEEGNISLLDVNDFDEDELSKSLTLDWESYE
Ga0209617_1002772312	F004431	N/A	LTKRIENKMTITYSLWDGAQLLGVDFKATSADEMNKAVAELQKVSKNVVAHMRKVEQN
Ga0209617_100277233	F004840	N/A	MYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMADEYSTVNLYTPTGKCYTKVFYRSGMVAVK
Ga0209617_100277234	F017995	GGA	MARMKELIEIISANCDECGGAGFLFFGDENNYDIEPCNCIADLSDELNVDWVNN
Ga0209617_100277235	F006744	AGG	MNLDEFKKHVTATRQASKAEALSVLSATITTQSNERENLNG
Ga0209617_100277238	F001562	GGGGG	MNKSQFEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMEDET