Scaffold Ga0209617_10001783

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10001783
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10097
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017829	Metagenome / Metatranscriptome	238	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000178313	F000980	N/A	MSVGSCIILGMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDTPLTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKTVHVLNSKIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWTASIEVSGTYSYNILENEYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0209617_1000178316	F017829	AGG	MANRYRVEIYDANKLNDITIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQLLSKATRIEFGS
Ga0209617_1000178323	F015208	GGA	MYKITVANDSEPIHFVKEYSDELEAHTEFAKYVDWGFADEYSTVNLYTPSGKCYTKLFYREGRKVVVK
Ga0209617_1000178325	F101047	AGGA	MVRMKELYTQILECDTCYGKGWLYYGDEDNYDVEACQCNPLSFFQENK