Scaffold Ga0209617_10000717

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10000717
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15071
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F028084	Metagenome / Metatranscriptome	192	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000071711	F028084	N/A	VKKYLLLLPLFLLVSCSEQNLDSRELPTKYPETPTMGSADDVSKELYKK
Ga0209617_1000071714	F010817	AGGA	LNKLASILALNFLFIGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFLGDNALITRQARERYNNLIKMYRIKFKKEKAIDLVEDSGVKPYKDTFGNELFLIDSEHLVYFGVLNSWLKEKVPADNIIDKTIDKINN
Ga0209617_1000071715	F091423	N/A	MQRRNSKLRRVIMPTGIIQALLSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSEIENAVKDKDLEQARKHISS
Ga0209617_1000071716	F014229	GGAG	MNKLQLAAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPAQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE