Scaffold Ga0209617_10000494

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10000494
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17247
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F027413	Metagenome / Metatranscriptome	194	N
F029049	Metagenome / Metatranscriptome	189	Y
F068843	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000049412	F002269	AGGAG	MKEQAKAAAVSYMRAALSCVGALYLSGITDPKVLANAFIAGLIGPLLKALQPSEKQLGVGAK
Ga0209617_1000049413	F015095	AGG	VERAQLLIGIALGVTTILGLGAGLIRHLVKFYLSELKHDNNGGHNLAGRVERIEARVDRIYEILLEDRLAK
Ga0209617_1000049415	F007029	AGGAG	MGFLDNYEDVNARIKRFRAEFPSGRLVAYIESFDIEKGTILVRAEAYREYEDTLPSAIDYAFGNVATYPQNMRKWMVEDTITSSYGRCIGLLTPSLEHSSRPTVQDMQKVETLPTSSDPWSTKASIEDMATMATAVLDISTQLGGELVAETPRCSHGTMVWAEGTAKATGKPWAAYKCTERIRANQCNPVWQVMTSTGWKPQV
Ga0209617_1000049417	F029049	GAGG	VAVCRVSSVAKVILDRSQEITAHRVGLERTIIRNADPTDASNYGQKYNNWHELVWQESESVGAEIAVALYYGDFAFKPAIDNGHDTADVGENIEVKWTKHANGHLILQNRGPGRPNDVAILVTGFSPCYILLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV
Ga0209617_100004943	F068843	GGAG	MSLTDEDIAFLIKIGQITEAPKKETKIKDTPTDKNEE
Ga0209617_100004948	F027413	AGG	VSTWLPEWRITVGTTVYDNVLTVNMATGRDDIDLQCNAGYARMEIVNTNNSAFDIDVTDALTLELKDSGGTYVPVFGGTVSDFGISVRSPEELGFITIGNILAVGSLAKLTKALFPDALAKDTDGDQIFDILNELLINSWFEVAPALQWYNYDPTTTWANAENVGLGEIDTPGLYEMIARSADPFSSYNLCAQIAQSALGQIYEDKAGRVCYADTDHRTQYLSVNGYTTISANYATPSSVKSILQIGKIRNSLVFNYGNNYANQATDSDPDSIANYGRYQRSVSSNLHNLADVNTLMTRELGLRAIPRSQLQALTFRLDSPALPDAERNKLIDIFFGEPVVINDLPINMFNGSFNGFVEGFAIRATPNYVDITLTLSPTDFSLVAPQWDTVSPANLIWTGVNATLIWENAFGGLT