Scaffold Ga0209617_10000027

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10000027
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47296
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (41.86%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100000271	F049419	AGG	MKLPKFDYLNLATTYILFGLIYGTIVALVWNYLFESVSSIHLSILQGFGIHLITRILFGNTNTNYINNFYTPKVPDLDKIDSYLKEMQEDLEKEADEVEKQY
Ga0209617_1000002710	F032548	N/A	MNYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEQASEFIMEHKNAK
Ga0209617_1000002716	F078229	N/A	MNKIKYTYYVEQDKDKDGNYVQSFSIYKVPVVKTIRVKTFNKLKDANDFLGKYESN
Ga0209617_1000002718	F048123	N/A	MKPRYDFTKGKMISYDGEIIEFAGSSKIDKYEDQIEEIMSLFNLKKGEYLVTDESKIGDFGKETINKIRLEKFQKKYKFSVMNKDFLYKIAERMYSYRPF
Ga0209617_1000002720	F104482	N/A	MKKIKKWKKEVTSEEFEKAMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNSKYFTECGFNWLGWIFEFQWSR
Ga0209617_1000002722	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLIVDGKIVPYVGEQNNFEFNETLGCYKDKTTGMEISLDQKEYEYVLDEIIFALQMIVDEDNIDINLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFESKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD
Ga0209617_1000002723	F062447	AGGAGG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFNKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL
Ga0209617_1000002724	F024040	N/A	MTEMITLHTNMNFFVSGHNWLAKVVLEKDIKKSDRYTEATTRAIESLLDQEEKEGVDLKVLDYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0209617_1000002726	F104483	GGAG	MKKKIIDKIDLIIEDITHIQELIDFDTTESSEHDLDSVVNLLAEIRGKVHNEVEEVEKIDLKDL
Ga0209617_1000002730	F039497	N/A	MSEENNFNSDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKYDLLNAMREASAEDE
Ga0209617_1000002785	F017268	N/A	VNLDINILFNLVLGALSFLGGWLFTRVFSLFDKQEKLMKDLNDKTFSDFIILRKELEAESRRNEQDIADLALKVSTTYATKDTVENAMEKIEDKLDRNFELIQQYFFDKN
Ga0209617_100000279	F036564	GGAG	MKLGRISLDLNYIVDMDNEDMVRHATEALYEDLMQGIKYGDLANWIRISEDKDAKEEMIPEFLLEEQND