Basic Information | |
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Taxon OID | 3300027718 Open in IMG/M |
Scaffold ID | Ga0209795_10054219 Open in IMG/M |
Source Dataset Name | Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1209 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Guanajuato, Mexico | |||||||
Coordinates | Lat. (o) | 21.0936 | Long. (o) | -100.2988 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016935 | Metagenome | 243 | Y |
F069799 | Metagenome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209795_100542191 | F069799 | GGAGG | VPESTRGRRAWRQAAAEIEQYRHTYDITDPDRALGPEPADRAQRAARQRARMAIERVQAKQRPSDLTRDAWPTSERTTQPRPGEQRGRPGPERAAG |
Ga0209795_100542192 | F016935 | AGGAG | MASSRPWPFDDDDDRLRGSVRPLSQADLQAILAHLTSDPEQLLAGTNADRPVVAVRLRASVGRPGGSAQARWRRARAAEWAAWIRTLPWRVAVTLGIGAGGGVLGSLLAPRLGLVLGGLVAVAAGWRLRFRASPDAVA |
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