Scaffold Ga0209599_10004383

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10004383
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5155
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000438310	F014017	AGG	MDNIEDYLDERHRKQIADEIRYLELPPEWRPHEVIRYIVRIIEKQNG
Ga0209599_1000438314	F001280	GAGG	MCIECGCEAFGSETGIIPVNITDVSKDGEAGLTLSMTSTPEQTRQFINE
Ga0209599_100043834	F016396	GAGG	MRKSERLRLLELHMVRLEMMVELYSQSLTNLLESQGLKAPTDLDAGKWYKAKMDTKDTE