Scaffold Ga0209599_10003595

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10003595
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5887
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F010248	Metagenome / Metatranscriptome	306	Y
F039131	Metagenome / Metatranscriptome	164	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100035951	F001176	GAG	VSDNGTGMTTPPNNEPSGAVTSQEAARKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV
Ga0209599_1000359512	F010248	GAG	MRKSDRIRLLEMEMLRMQFQIEYLNTAVTLLLEENKVKGPDMDAGKWYDAKLNKNK
Ga0209599_100035952	F001280	GGCGG	MCVECGCESFGSETGINVIPGGMLNVSTDGEAGLTLSMTATPEQRERFISGE
Ga0209599_100035953	F105175	AGGAG	MADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK
Ga0209599_100035955	F039131	N/A	MIEYTMTQDEIYGLEGYFERKYIKQVVDQINNFEFPDDWTPKQVIDYITYKIDRK