NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10002315

Scaffold Ga0209599_10002315


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10002315 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7959
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003379Metagenome / Metatranscriptome490Y
F003690Metagenome / Metatranscriptome473Y
F010085Metagenome / Metatranscriptome308Y
F017995Metagenome / Metatranscriptome237Y
F051704Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000231512F001562GGGGGMSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHQDYLAELENE
Ga0209599_1000231513F003690GGAMTINGFELYITSEYGFEFDSFLGSIYLPWHTILITTALVIAYKIYKRKKNK
Ga0209599_1000231521F051704N/AMHDHENIVLATGSGITEMQVMWILMGLMAAHHIWMWWKMKKKDCNCK
Ga0209599_1000231522F003379AGGAMKKIFALITLTATAVFSGLAMSRFLNWAGKQEDFFDFDLNEDIDNEQF
Ga0209599_1000231525F010085AGTAGGMQIQYVSKYIALSEEGLVPRLECPMDQGSLLCNLDLEDNIYLYCLSCDYKNYIGLEVYEKLVKEVNNV
Ga0209599_100023155F017995GGAMAKMKEYIEIIAANCDECGGAGFLFWGTENNYDVEPCSCVDEISDELTLDWINN
Ga0209599_100023157F000447AGGAMGYIEIFRMNEEGAGWVDLSEATPDELFNIELGLLEEGAFE
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