NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209599_10001951

Scaffold Ga0209599_10001951


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10001951 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9085
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F008814Metagenome / Metatranscriptome327Y
F014017Metagenome / Metatranscriptome266Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000195110F077310N/AMTLDSNSVIIVILAALLSGMGTAMINGIRESKKEKIRRTEREQDMLKMELKDLKIELYKLEKDLIEWRDKYYEAVQELIEVKGELENCLVELSHIVHHED
Ga0209599_1000195115F008814N/ALAEDKTTVLEGIIQDIGKELYQKWYNALAIEDRTEEASKVMLANANETAFWTIQEFMNRFNAAAEALRDN
Ga0209599_1000195119F014017N/AMDKIQDYLDEKHRKKIADEIRYLELPPEWRPNEVIRYIVRIIEKNNG
Ga0209599_1000195122F001280GGCGGMCVECGCEAFGSETGIVPVTITDVSRDGESGLTLNMTSTPEQTRQFINE
Ga0209599_1000195125F006846AGGAMMLTNLIEKYLMRPKRLREAIQAVVRENDELLHRLAEYKEEGPTNLTWAEGDRWYGWTYNKEKKRYYFDDIGNESLMGLWEDQWAREESK
Ga0209599_100019517F000473AGGAMEFINKDKDHFKYGINEWTGEPNKPVFYTPEMAKRIREIKKPVMSLQMDIVKYPEFLAIRLYEDNFLQYEGIKKEIVIDYVGKVKKIIESYGVRCELEGVPSARILRSN
Ga0209599_100019519F000671GAGGMEKILCYSCNKSKNKLSVRKSILIPINLLLCETCIAAKLEPRWVVILSGRQLGPEAVKEFIVKKRYLGTDIAASELFV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.