Scaffold Ga0209599_10000805

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000805
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17735
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (81.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F004924	Metagenome / Metatranscriptome	418	Y
F010245	Metagenome / Metatranscriptome	306	Y
F044488	Metagenome / Metatranscriptome	154	Y
F045751	Metagenome / Metatranscriptome	152	Y
F085611	Metagenome / Metatranscriptome	111	Y
F093757	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000080510	F010245	N/A	MKRTARSDSNFVIYVARHNGEEYIGLTRKGSTTVAKAVKERWRKHISRAKHEQRDWVIYNYIRAGNWTDWEHEVICVIRGRAEAYAYERELVKMIEPTLNDQYM
Ga0209599_1000080522	F093757	GGA	MKTNRDKNKEHDSREILRVRPKQAPYEFKALEDVIRSWVTGNK
Ga0209599_1000080525	F044488	AGG	MRYGVSYSTDLLDGCVVIRDFHSTPPGRVYAIIPRDSRHEGEQIAQQICDLLNKELPNELGTV
Ga0209599_1000080526	F085611	N/A	MNWELYEVWSVDEDGHEDLIDTTKSLKEARSIAEANLTEYYAECIIYAEDPQGELIEVERIT
Ga0209599_1000080532	F004924	GGAG	MRDAILAKLAEVEEMLLEATLDGEQLAEMDCFTEVTGAFNALTEAVEYYVD
Ga0209599_1000080536	F045751	AGGAG	MGTPLYMELGDACRIVQEYAEIHTGNDILEALKDMEFCYDDLDKEDRVAYNMFMAAGRKMFQPA
Ga0209599_1000080544	F000354	AGGAG	MAKVNYNQFPSFDLNEACDFFDTEKQTNWKKISKFIIADGQEFVNVMEKEFDFEDTTDSEYAAFEAGVRYALAKMNSALDDADLPLEVAEVDLVESMGFMLVRTDDTPESFVKRVFKKPVLMVESWVD