Scaffold Ga0209599_10000753

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000753
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18787
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (82.69%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F003393	Metagenome / Metatranscriptome	489	Y
F003965	Metagenome / Metatranscriptome	459	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F008305	Metagenome / Metatranscriptome	335	Y
F009882	Metagenome / Metatranscriptome	311	Y
F011386	Metagenome / Metatranscriptome	291	Y
F018352	Metagenome / Metatranscriptome	235	Y
F019826	Metagenome / Metatranscriptome	227	N
F020910	Metagenome / Metatranscriptome	221	Y
F029439	Metagenome / Metatranscriptome	188	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000075311	F020910	GAGG	MWAKYTFVCDPFKCDSLLEFTARDGYGFPNGIVSMTCPCGREMQYVSVEDIESKFYEPVIKVTPPKVVKINTNPYN
Ga0209599_1000075312	F008305	GGAGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVADVG
Ga0209599_1000075316	F009882	GAGG	MSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEATYLTSKVTDLEWDLHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVSIEAELSSYDYDADLNVDEVSLEDHY
Ga0209599_1000075317	F000684	AGGA	MTLSGYTYQIGDLFTTSKTGVTGRIVKFSPINSKLTRVSLQLANGSRRLAMVSTTK
Ga0209599_100007532	F019826	N/A	MGFMRRSIRLAVSKEEKVANKMVALLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDELDRGVYYGTK
Ga0209599_1000075321	F003393	AGG	MAATIMNMEYVKVDILTSGQLEVDDLIQVGDEVVSIVEIVSLADGYTLEIINDFGEKEVIEVEEYEQFDLMMLQ
Ga0209599_1000075325	F018352	AGGA	MGILAHDACYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKENA
Ga0209599_1000075329	F005348	AGG	MINSVMAFDCDECNGQGLIFWGNDLDYNVEKCECNDFALGNLFSSGEAN
Ga0209599_1000075331	F000447	AGG	MGYIEIFRLDEKGAGWVDLSEATPDELLTLELGLFQEGAL
Ga0209599_1000075335	F081245	AGG	MIDFVKQLELNNYLDENQDPLAKMLDELILKGEYK
Ga0209599_1000075336	F003965	AGGA	MNSNVIITVCKSHVPNKSAISELVDTQFTFCEVCENNIERWYNDSDPERLPMWTSWQVSK
Ga0209599_1000075337	F029439	AGG	MTTLNTITLEPNHVMASSNTGSPMVFRNTVGNYISRKAYLELLATKQGVVSHRYLSPNESRWVMNNTKVGN
Ga0209599_1000075340	F011386	GAGG	MKVTITSMQGNTRDISLMSKQEVLDFIKLYRSTLKKNQRVKVTCDLVGIDGYLQGTA
Ga0209599_100007535	F006844	AGGAG	MAKWDIEVIFEPTGTFMNFEYETDNEDEDSIFNEINNQLSIVPFLVEKNEEE