Scaffold Ga0209599_10000387

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000387
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29316
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (70.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F007644	Metagenome / Metatranscriptome	347	Y
F007921	Metagenome / Metatranscriptome	342	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F031497	Metagenome / Metatranscriptome	182	Y
F038241	Metagenome / Metatranscriptome	166	Y
F066776	Metagenome / Metatranscriptome	126	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000038716	F014140	N/A	MNKYRIKLDVEVEVEAFNSEDAGEYIHDIFNIDDEIKKVNIVKIQQK
Ga0209599_1000038719	F066776	GGA	MLNLTEQGVEIFIKKFQSSVQKSFWNNYDLVIWKKDHGGYTDTKGMYYNNTWGKAEKISVDKKGIWKLPKKYVRYFK
Ga0209599_100003872	F000376	AGGA	MSEYQEMARQCKCCTKHVPLPTVMKTYNGLIVCPTTLQNIIEYNRLWETFGSRPMGSIRKHFSEYVQQIVENQYSNKEGINGNT
Ga0209599_1000038721	F011394	GGA	MFIDKNKNHFKYGINEWTGEPNKPTFYTKEMALKIRELKKPTSTLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG
Ga0209599_1000038723	F105192	N/A	MNIPLTEILITLFAAAISGLLTAQIGARRSKKEKAERQVEKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHLEIHSDEH
Ga0209599_1000038728	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSANAGETAVWVIQTFMNKFNNAADELKGD
Ga0209599_1000038757	F007921	AGGA	MIDWLVNRIFRWDSLRKAVFDEVRMYQSIDRSMWEYEKEGPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLIGLWEDQWLREADAH
Ga0209599_1000038764	F031497	AGGCGG	MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRIMEMVVSVISEQAKMYDVYSNQGTYTEGLALAKELNECIKAYQQDNNLVNLKLPSRSYKVKREEPVRERIFGWREEEDPFSQ
Ga0209599_1000038766	F000441	AGGA	MKMSDNYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQADLS
Ga0209599_1000038769	F007644	AGGAG	MTKSSQFMEYMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNSTNERV
Ga0209599_1000038770	F038241	N/A	YVLGIRGGIMLGYTKEDIDQMSNAIHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD