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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000255 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37722 |
| Total Scaffold Genes | 85 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (81.18%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000354 | Metagenome / Metatranscriptome | 1244 | Y |
| F013757 | Metagenome / Metatranscriptome | 268 | Y |
| F017266 | Metagenome | 241 | Y |
| F031871 | Metagenome / Metatranscriptome | 181 | Y |
| F032651 | Metagenome / Metatranscriptome | 179 | Y |
| F036696 | Metagenome | 169 | Y |
| F093757 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000025525 | F017266 | AGG | MGKSYVNSLLQNWYAGLKEINPTIKWQRLPGLKLQAYTDDVAPRGFERGLRESDMDPIQAWSEECNCGKRMSFNIWNFKSEKQITMFLMKWASL |
| Ga0209599_1000025545 | F031871 | AGGAG | LKPSHTVYIYKKDARTKSGERLVSTTVWQNRDAAEMAREVRELQYELWPVSKGFRIEFVPTMKRVTNLMSGVEIEIPHDTPRACDPSSELYWSM |
| Ga0209599_1000025549 | F013757 | AGGA | MLTNCVAKAKLVFNKKLKCYKLIVAFNAHKRFDEAGNVKYAFPTQAKCNYVSGDLLADNLQAELASVLPSVYATLRTNSVEFVE |
| Ga0209599_1000025550 | F036696 | AGGA | MSKALNKRIANAFGKIYDNGDSGLNYMDRHEALDETLMEHFYNDTLETLSKTQLTQMADMLEQIADDMSFDLEDCF |
| Ga0209599_1000025551 | F032651 | AGGAG | VHKVTVVDIEAAGYYTSEHASGSTVKVTLQRGKAIASCDEILIWDEEYAEDCFEDWMDCALAGEAGYTYTEEA |
| Ga0209599_1000025566 | F093757 | AGGA | MKTNREKNTEHDKKEILRVRPKQEGKYEFEPLAAVIRQWVTANEQT |
| Ga0209599_1000025575 | F000354 | AGGAG | MTKVNYDRFPSFDLNEACDHFDSEKQSNWKKIGKFIVADGQEFVNVMEKDFDFEDTGEGEYAAFEAGVRYALAKMNIALDAADLPLEVAEVDMVESMGFMLVRTDDTPESFAKRVMKKPVLMVESWVD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |