Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000044 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10000044 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	87910
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	95 (76.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

87910

Total Scaffold Genes

125 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

95 (76.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F004092	Metagenome / Metatranscriptome	453	Y
F011386	Metagenome / Metatranscriptome	291	Y
F017301	Metagenome / Metatranscriptome	241	Y
F030765	Metagenome	184	Y
F045752	Metagenome / Metatranscriptome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_10000044100	F017301	AGGAGG	MNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGVLPDAKEVEKALKSAKAPVKKAAKKAAPKK
Ga0209599_10000044112	F045752	N/A	VADPNQTPARGEWACPCNGCAKAVAFERKQLIELFEQAKHDYLVYRGSSFHKDTGELMWAKDDAMAYAEGIDSVIELIKDRMPKPKPKK
Ga0209599_10000044123	F030765	GAG	MDTEQTFDQEFDVKETTKAIVDKAKAEVKAKYGNKKRHRQ
Ga0209599_100000442	F048982	GAGG	MISIKLQDVLATCRQIRGNDHDSGTHYLLGYLWASMSDKEKQRIATLFTNDLLEQEKNK
Ga0209599_1000004458	F004092	N/A	MADFKIFSGKFPCKKCQEEVLSLRLWPESGDATWMCSSKHISKVNLLPQKKKKADFKSE
Ga0209599_1000004466	F000264	N/A	MTLMKNRLTNNTMAAKLYTSEAWLRKRFLMDKKTPQDIAKECGTSVETIYVYLAKFGLRKSKR
Ga0209599_100000448	F011386	GAG	MIDLTLTTMQGNTRKINLMSKQEVFDFIELFKSTLHENQRVKVTCDLLGINGYLQGTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10000044

Overview

Ecosystem & Geography

Associated Families

Sequences