Scaffold Ga0209599_10000020

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000020
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 124368
• Total Scaffold Genes: 205
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 153 (74.63%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011487	Metagenome / Metatranscriptome	290	Y
F013888	Metagenome / Metatranscriptome	267	Y
F018929	Metagenome / Metatranscriptome	232	Y
F020167	Metagenome	225	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y
F029107	Metagenome / Metatranscriptome	189	Y
F030765	Metagenome	184	Y
F057416	Metagenome / Metatranscriptome	136	Y
F068817	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_10000020100	F057416	AGTAGG	MSKSTENAPPTFYHHKPIKKFYLDGVIHDESALGRLKAEYVRLLESEMRLSGYVPRIDILPDFTLDYNHKKKYFEFQLTVHGTYTGRKQSEWIAGIDGSTAIYTQKSKSKEFSQEQV
Ga0209599_1000002013	F022197	AGGA	MTLETETMEDPTMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK
Ga0209599_10000020161	F018929	N/A	MTNQEIAQLLDQESYRIWDTTKVIKNQDYHDGLVKGLKMASKLVAKL
Ga0209599_10000020164	F030765	GGA	MDTEQTFDQEFSVEEITKAIVDRAKSEVKSKFGNKKRHRQ
Ga0209599_10000020165	F068817	GAG	MDINEFMTDPWKKFNEMRNTPHECDYDYRIDSSGAMFFEICKLCLDTKGVVEMDK
Ga0209599_10000020182	F020910	AGAAGG	MWSKYTFVCDPEECDAMVEFTARDGFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN
Ga0209599_10000020184	F020167	N/A	MRTIDELVNEMYMDNESHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEVC
Ga0209599_10000020191	F011487	AGGAG	MTYENDEILDEYYATVCPSCKENSVDEYEDKCTHCLLEEMSYTYNEDIALEMSLGLDY
Ga0209599_1000002049	F029107	N/A	MTTHALTTLSSTSATQLTPNGMHSGMDITIQNVDASAYVYLGGEGVTASSYGYRLAPGSAWSVELPPLDALYAITDTNNSKVALFKMGLE
Ga0209599_1000002058	F013888	AGGTGG	MATIGILPASGRASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEIRVSTKAEWVPIIKNMDMNIKLIVKEPSTMSDAINFMVGEYNDTVIVGMPDTYVLDAPGNIYKEMLKETNADLVLGVWECNDELKGRVGQVLLSEDKVIASEDKSDNCDYLDMWGIMMFRKNMIRYLDSSLEHPGKQIKDWISEGKNIRAVRPGGKYMDIGTLKGLKNLYKEMDLK