Scaffold Ga0209188_1010313

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1010313
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5343
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F050890	Metagenome	144	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y
F093219	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_101031312	F006060	AGGAG	MLKFQNIATVGDIIRAYDFKPMAGRDDAFIEGVVIDANSYESGFSSYKIKVTVDKFKKYETKVTARNRVDQIAFVPHQTSFMEFDFRVINLSKV
Ga0209188_101031313	F068426	AGGA	MNTWDFVVSELKSLQQEFQDNQPIIELFVEQKLLCGYNIFKNKDQVYTA
Ga0209188_10103133	F093219	AGGA	MNNEPVAWTVCLDCGKKVTGDSIHTCSPQLKTLTDEEIDSIGDEVSNLIDTYAGRREFARAILKKAQEKLD
Ga0209188_10103135	F050890	GAGG	MSYDSDFERVYMVEFQSGRIIHVGQYTVQDVLEYCADEHESEVIKSIYEEVYTGERY
Ga0209188_10103136	F083677	GGAG	MSINHFDGMSVDDLQSYYSDFHKDYFGFRPRSSTPEQWVNRDWLIEQINGIHNAMDEMKKTYGGREQLRAEGWQIYEEDYL