Scaffold Ga0209188_1002274

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1002274
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14370
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F004431	Metagenome / Metatranscriptome	438	Y
F009143	Metagenome / Metatranscriptome	322	Y
F013414	Metagenome / Metatranscriptome	271	Y
F017995	Metagenome / Metatranscriptome	237	Y
F019325	Metagenome / Metatranscriptome	230	Y
F024549	Metagenome / Metatranscriptome	205	Y
F029434	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10022741	F019325	AGGAG	MTQLTETLYSTIVHEFHNGGVKSSYGLNAYTRKALLRDLLSSKACYCIECVCEVTHTA
Ga0209188_100227410	F029434	N/A	MNKYTFGVWLDIDAEDENQALSLFDEVVKKNPFVSDSYCFEWKEVANV
Ga0209188_100227411	F024549	GAGG	MYKLFTYYDGNLEYTHQFADALQAFEAFAKCYDVGFAKELATYNLTMPNGKMYTKNFNRIGLVSAK
Ga0209188_100227416	F002245	AGG	MKNVMKVPHTIVFEALIDLDKIPANLLPALIALDENSIQQMCKEATLHALGMSNVLPLANENNTWAEVTIAEGN
Ga0209188_10022742	F004431	AGGA	MTITYSLWDGAQLLGVDFKATSADEMNKTVTELQKVSKNVVAHLRKVEM
Ga0209188_100227427	F001125	AGGCGG	MGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSQIVGEDWTQETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVM
Ga0209188_10022743	F009143	AGG	MMTKWDTIQADVADAYVYLDEEEMYNKALAEGAIDLDANDFDEDELHKALTLDWND
Ga0209188_100227432	F000263	GAGG	MTPEENGLPPHLQRLVNYNVSGLDIMHGELKNLMLIAEQKLADAIEVEEESGEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGVRNENLKDGH
Ga0209188_100227433	F001019	AGGA	MSTYEPSLEIVEVEYSCSPGGIDLFEVYDKSDIPLDVPIYETENLTEAVQFCYNLGKDFTVRTLAEWNERELVYEA
Ga0209188_100227436	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVAIQEAISKGITFSDPQPVTKKAK
Ga0209188_100227437	F013414	AGGCGG	MKTREIKVAEALVNLTEDHWFNPAILARYLTDQPFYTVDRIMELIAQTIRWQANRYNDELDTEDGIYNSGLTSEGLFLANELNQTLNRLIKTYKWENIKLPADPDKIIRRLPKIEEQSYRHSWLHDTSKQDPVLISHPFI
Ga0209188_10022745	F001562	AGGAG	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLDELEN
Ga0209188_10022749	F017995	GGA	MSKMKEYIEIIAANCDECGGAGFVFFGDERNYDVEPCDCIADLSDELTLDWVNN