Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000663 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000663 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32128
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (87.04%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

32128

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (87.04%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F029678	Metagenome	187	Y
F031792	Metagenome	181	Y
F034113	Metagenome / Metatranscriptome	175	Y
F048001	Metagenome	149	Y
F075840	Metagenome / Metatranscriptome	118	Y
F083438	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100066312	F083438	GGAGG	MNKGSQAPAPMSKPIHGAAGAGAKVKGGDVKMPFAGAAKPGKMVKKGK
Ga0209188_100066314	F034113	AGGAG	MAIDPSYKVEAVEEDYIDKGAVKTPQMNPEVDRKYAAGKAQALATDKVEWPTKVAGLTY
Ga0209188_100066323	F031792	GAG	MSYEPDWNDPVFYAEEFEDTIKCFICGDPLDRDDIVWADEEGQIGKEGNDTAWCVPCLPSEKGDNNE
Ga0209188_100066324	F000821	GGAG	MNEEYLRAKFNLCLDQSEKNIKEEDIANAIKNLERANRAMARIFNLEEEENE
Ga0209188_100066325	F029678	AGGAGG	MNKVTGFTIFNKQTGQKLATLPLTIPIGATVEAYERDGHSVSWGWEENNE
Ga0209188_100066326	F001477	GGAGG	MSNIYTIHPPKSDLILFYEVLTPNGENEWGGANAEHAIEWLSRAPSGSRVLVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0209188_100066327	F003863	GAGG	MKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGTTWSIASDSKLTITTRTRANAVPDVAGRTDYESADEGNYGGEA
Ga0209188_100066332	F013279	AGGAGG	MMYDYRCTECKSELTIERKITDEALTPSCFDCHIPMIRKWDAPTITFKGTGWGKDD
Ga0209188_100066341	F048001	AGG	MSNTEIQYVKKRIKQLEADMANLVMALIELKVFKIKIDKDGKAIYDTGKDEQSEVQ
Ga0209188_100066349	F075840	AGGAG	MKFNNKVLDMWAKWFVGNALTAVVVIGKSPLDFAAADWKHAANAIWLAVVPVVIAWANPKHELTMTKAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000663

Overview

Ecosystem & Geography

Associated Families

Sequences