Scaffold Ga0209188_1000612

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000612
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33423
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (85.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F030989	Metagenome / Metatranscriptome	183	Y
F063404	Metagenome	129	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100061254	F006060	AGG	MLKFEGIATVGDIIRAYDFKPMAGRDDAFIEGVVEKANCNESGFNSYKVTVTVDKFKKYETKPNPRNRVGQIVFVPHQTSFHEFDFRVVNLSKV
Ga0209188_100061257	F068426	AGGTGG	MNTWEFVIKELKSLQQGFADKQPIVELFVEQILLKGYKIIK
Ga0209188_100061260	F083677	AGGA	VSHHLDNFTVDELQSYFSDFHKDYYGFRPRFATHEEWNNRDWLVEHIDGIHNSMDERKKTPEGRASLRADGWVIDESEFV
Ga0209188_100061273	F030989	GGA	MKYIAKPKLFNNMGMKEFDDAREAILYLNKVLNDDQVDPALDYVFIAPKASPKQLKHAIEEYTGIGKLICVA
Ga0209188_100061274	F063404	AGGA	MDHISRSDIITMLSFKGFTTDALMKKSDEELDNLYIEYIVLAEDYV