Scaffold Ga0209188_1000167

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000167
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73524
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (8.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004093	Metagenome	453	Y
F010082	Metagenome	308	Y
F026551	Metagenome / Metatranscriptome	197	Y
F037733	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100016710	F010082	N/A	MLSPRLTNCIECSSIPALLADIDCKLSILANDAYNNIVFILNRPIPDVVIGDLLNYKRILTYKYCNPDYAVHYSVKMIASKVKLLINK
Ga0209188_1000167101	F037733	N/A	MTSGKAKKSGAPRKAPKVKPPNPVNGNYMKEADTVKRLKSPMAPMKQKRLSK
Ga0209188_1000167117	F026551	N/A	MARSISSDSRKLTFGARKKGKAKKGSGPKDKAVSKYRAQGR
Ga0209188_100016752	F004093	N/A	MIVQTIHEILNPFDVETPLGYGVAIFMIAGSIHSNPQFIIRLYNTGEVRTVDQNDIKIYGNPTTGEPLTPKK