Scaffold Ga0209188_1000095

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000095
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102251
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (53.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051911	Metagenome / Metatranscriptome	143	Y
F080872	Metagenome	114	N
F098672	Metagenome	103	Y
F104701	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100009524	F098672	N/A	MPSKKGGGFLETMVASGVGAYAAKNSSSMKGLLWTLAKYVLVIMVVSFLIMFVLRSMSTENFVPVTPSNTGDEKTQTPAGNVILH
Ga0209188_100009536	F051911	N/A	MLSIYHLPATKKLMETTSIFLIRHNGKWIKIQPRPFEPERMTTDIAWMQIKEGIDVEEAYRRWFELQRRISRVLK
Ga0209188_100009594	F080872	N/A	MSGIKIQKVDHVEPEVKPSRHKSMRTFPRGVIKGTRSRSRGGSEFTPVKDPAKPPPSRRSTLKIVTKKGADLRRKTIKQSVDKLNDAGVRAALKKSNITVNPKTPPHIIRELLEGGMESGMIVVK
Ga0209188_100009597	F104701	N/A	MPAAPSPSPVMGGRRRTHRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA