NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104701

Metagenome Family F104701

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104701
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 59 residues
Representative Sequence MPGMTPAGNVDVPAMGQSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Number of Associated Samples 67
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 6.00 %
% of genes near scaffold ends (potentially truncated) 18.00 %
% of genes from short scaffolds (< 2000 bps) 55.00 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (90.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(43.000 % of family members)
Environment Ontology (ENVO) Unclassified
(84.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(89.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.35%    β-sheet: 0.00%    Coil/Unstructured: 70.65%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF04560RNA_pol_Rpb2_7 26.00
PF16903Capsid_N 19.00
PF02037SAP 16.00
PF04566RNA_pol_Rpb2_4 6.00
PF04724Glyco_transf_17 5.00
PF04777Evr1_Alr 2.00
PF03159XRN_N 2.00
PF02776TPP_enzyme_N 2.00
PF03407Nucleotid_trans 1.00
PF00535Glycos_transf_2 1.00
PF14787zf-CCHC_5 1.00
PF00075RNase_H 1.00
PF08795DUF1796 1.00
PF00004AAA 1.00
PF02511Thy1 1.00
PF01541GIY-YIG 1.00
PF04451Capsid_NCLDV 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0085DNA-directed RNA polymerase, beta subunit/140 kD subunitTranscription [K] 32.00
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A90.00 %
All OrganismsrootAll Organisms10.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002835|B570J40625_100015253Not Available13476Open in IMG/M
3300002835|B570J40625_100284217Not Available1692Open in IMG/M
3300002933|G310J44882_10000467Not Available20089Open in IMG/M
3300003388|JGI25910J50241_10006444Not Available4275Open in IMG/M
3300003796|Ga0007865_1007295Not Available1197Open in IMG/M
3300003819|Ga0007878_1007693Not Available1087Open in IMG/M
3300003827|Ga0007880_1015422Not Available693Open in IMG/M
3300004112|Ga0065166_10386544Not Available583Open in IMG/M
3300004684|Ga0065168_1029377Not Available864Open in IMG/M
3300004686|Ga0065173_1070750Not Available629Open in IMG/M
3300004686|Ga0065173_1080453Not Available586Open in IMG/M
3300004772|Ga0007791_10000973Not Available9977Open in IMG/M
3300005662|Ga0078894_10147732Not Available2109Open in IMG/M
3300005662|Ga0078894_10419684Not Available1207Open in IMG/M
3300005662|Ga0078894_10778615Not Available839Open in IMG/M
3300005662|Ga0078894_11079947Not Available686Open in IMG/M
3300005662|Ga0078894_11116135Not Available672Open in IMG/M
3300005662|Ga0078894_11165716Not Available654Open in IMG/M
3300005662|Ga0078894_11206539Not Available641Open in IMG/M
3300005662|Ga0078894_11539839Not Available551Open in IMG/M
3300005662|Ga0078894_11738064Not Available511Open in IMG/M
3300006805|Ga0075464_10911777Not Available549Open in IMG/M
3300008055|Ga0108970_10357875Not Available571Open in IMG/M
3300009068|Ga0114973_10002619Not Available12951Open in IMG/M
3300009068|Ga0114973_10108726Not Available1570Open in IMG/M
3300009151|Ga0114962_10011713Not Available6433Open in IMG/M
3300009151|Ga0114962_10117023Not Available1639Open in IMG/M
3300009151|Ga0114962_10153325Not Available1382Open in IMG/M
3300009151|Ga0114962_10223622Not Available1086Open in IMG/M
3300009152|Ga0114980_10006287Not Available7827Open in IMG/M
3300009154|Ga0114963_10001800Not Available14628Open in IMG/M
3300009154|Ga0114963_10048736All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis globosa2716Open in IMG/M
3300009158|Ga0114977_10181764Not Available1240Open in IMG/M
3300009159|Ga0114978_10380846Not Available848Open in IMG/M
3300009159|Ga0114978_10714263Not Available570Open in IMG/M
3300009159|Ga0114978_10872448Not Available504Open in IMG/M
3300009160|Ga0114981_10011362All Organisms → Viruses5284Open in IMG/M
3300009164|Ga0114975_10029109Not Available3314Open in IMG/M
3300009164|Ga0114975_10340859Not Available825Open in IMG/M
3300009183|Ga0114974_10738737Not Available532Open in IMG/M
3300009184|Ga0114976_10172859Not Available1201Open in IMG/M
3300009684|Ga0114958_10001459Not Available18672Open in IMG/M
3300010158|Ga0114960_10034419Not Available3130Open in IMG/M
3300010334|Ga0136644_10358384Not Available834Open in IMG/M
3300010334|Ga0136644_10492001Not Available685Open in IMG/M
3300010374|Ga0114986_1024646Not Available1126Open in IMG/M
3300010885|Ga0133913_10006719Not Available29780Open in IMG/M
3300010885|Ga0133913_10512674Not Available3159Open in IMG/M
3300010885|Ga0133913_12804645Not Available1173Open in IMG/M
3300010885|Ga0133913_12916895Not Available1145Open in IMG/M
3300012000|Ga0119951_1035664Not Available1558Open in IMG/M
3300013005|Ga0164292_10102795All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prymnesiovirus → unclassified Prymnesiovirus → Phaeocystis globosa virus 12T2151Open in IMG/M
3300013006|Ga0164294_10008516Not Available8711Open in IMG/M
3300013286|Ga0136641_1018722Not Available2166Open in IMG/M
3300013286|Ga0136641_1043480Not Available1321Open in IMG/M
3300013286|Ga0136641_1043898Not Available1314Open in IMG/M
3300013286|Ga0136641_1077022Not Available944Open in IMG/M
3300013295|Ga0170791_12739235Not Available506Open in IMG/M
3300018868|Ga0187844_10257033All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax736Open in IMG/M
3300020048|Ga0207193_1000056All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes171976Open in IMG/M
3300020172|Ga0211729_10184109Not Available761Open in IMG/M
3300020172|Ga0211729_10529112Not Available15812Open in IMG/M
3300020205|Ga0211731_10014531All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax1950Open in IMG/M
3300020205|Ga0211731_10785619Not Available4752Open in IMG/M
3300023174|Ga0214921_10006501Not Available15965Open in IMG/M
3300023174|Ga0214921_10015717Not Available8599Open in IMG/M
3300023184|Ga0214919_10000522Not Available65517Open in IMG/M
3300023184|Ga0214919_10005018All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → unclassified Phycodnaviridae → Chrysochromulina ericina virus19019Open in IMG/M
3300025368|Ga0208620_1000600Not Available5814Open in IMG/M
3300025379|Ga0208738_1001540All Organisms → Viruses5109Open in IMG/M
3300025388|Ga0208503_1000079Not Available20765Open in IMG/M
3300025578|Ga0208864_1002020Not Available6829Open in IMG/M
3300025648|Ga0208507_1064583Not Available1163Open in IMG/M
3300027708|Ga0209188_1000095All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes102251Open in IMG/M
3300027708|Ga0209188_1034017Not Available2405Open in IMG/M
3300027710|Ga0209599_10000547Not Available23808Open in IMG/M
3300027710|Ga0209599_10011575Not Available2673Open in IMG/M
3300027712|Ga0209499_1030109Not Available2402Open in IMG/M
3300027733|Ga0209297_1129623Not Available1054Open in IMG/M
3300027733|Ga0209297_1264841Not Available654Open in IMG/M
3300027734|Ga0209087_1002631Not Available10056Open in IMG/M
3300027741|Ga0209085_1037424All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prymnesiovirus → unclassified Prymnesiovirus → Phaeocystis globosa virus 12T2279Open in IMG/M
3300027744|Ga0209355_1012940Not Available4349Open in IMG/M
3300027756|Ga0209444_10094888Not Available1231Open in IMG/M
3300027759|Ga0209296_1021536Not Available3668Open in IMG/M
3300027763|Ga0209088_10000254Not Available38826Open in IMG/M
3300027782|Ga0209500_10447917Not Available508Open in IMG/M
3300027804|Ga0209358_10137286Not Available1319Open in IMG/M
3300027963|Ga0209400_1233573Not Available740Open in IMG/M
3300027969|Ga0209191_1240879Not Available693Open in IMG/M
3300027969|Ga0209191_1297004Not Available600Open in IMG/M
3300027971|Ga0209401_1001100Not Available18071Open in IMG/M
3300027973|Ga0209298_10077283Not Available1489Open in IMG/M
3300028025|Ga0247723_1005433Not Available5742Open in IMG/M
3300028027|Ga0247722_10000464Not Available25047Open in IMG/M
3300028393|Ga0304728_1005187Not Available7226Open in IMG/M
3300028394|Ga0304730_1085703Not Available1407Open in IMG/M
3300034102|Ga0335029_0363438Not Available888Open in IMG/M
3300034116|Ga0335068_0265042Not Available870Open in IMG/M
3300034357|Ga0335064_0000111Not Available45782Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake43.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake14.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater12.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater11.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.00%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater2.00%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater1.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment1.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.00%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300002933Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USAEnvironmentalOpen in IMG/M
3300003388Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003796Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09EnvironmentalOpen in IMG/M
3300003819Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09EnvironmentalOpen in IMG/M
3300003827Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09EnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300004684Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (version 2)EnvironmentalOpen in IMG/M
3300004686Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2)EnvironmentalOpen in IMG/M
3300004772Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5MEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009151Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009154Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009684Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaGEnvironmentalOpen in IMG/M
3300010158Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaGEnvironmentalOpen in IMG/M
3300010334Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)EnvironmentalOpen in IMG/M
3300010374Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17EnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012000Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007AEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013286Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23YEnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300018868Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50EnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300025368Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes)EnvironmentalOpen in IMG/M
3300025379Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)EnvironmentalOpen in IMG/M
3300025388Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes)EnvironmentalOpen in IMG/M
3300025578Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M (SPAdes)EnvironmentalOpen in IMG/M
3300025648Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)EnvironmentalOpen in IMG/M
3300027708Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027712Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027733Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027804Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028027Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FCEnvironmentalOpen in IMG/M
3300028393Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034357Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
B570J40625_10001525323300002835FreshwaterMSTLSPASATGGRRHTRRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
B570J40625_10028421743300002835FreshwaterMPGGRRRTRKGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
G310J44882_10000467153300002933FreshwaterMSPAPVQGGRRHTRRAHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
JGI25910J50241_1000644423300003388Freshwater LakeMPSTMSPAPVSASTTGGRRRTRKGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0007865_100729513300003796FreshwaterKPALGDDMGGGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0007878_100769313300003819FreshwaterTPVSPAGNSQVPAMGGRRGTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0007880_101542223300003827FreshwaterMAXTPVSPAGNSQVPAMGGRRGTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0065166_1038654423300004112Freshwater LakeMPGTTPAGNYNVPAMGEGQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0065168_102937723300004684FreshwaterMAATPVSPAGNSQVPAMGGRRGTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0065173_107075023300004686FreshwaterMAPTPVSPAGNSQVPAMGGRRGTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0065173_108045323300004686FreshwaterMTPAGNEVKPALGDDMGGGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0007791_1000097373300004772FreshwaterMPETTPAGNAVAPPMGGRGRTRRGPSAKALKRVLKAHGLKSSGKKATLRARAKKAHILSKA*
Ga0078894_1014773223300005662Freshwater LakeMQGTTPAGNSVKPAMGEGQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA*
Ga0078894_1041968423300005662Freshwater LakeLSQPLNKMPGTTPAGNYTAPAMGEGQSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0078894_1077861523300005662Freshwater LakeMQGTTPAGNYNAPAMGEGQSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA*
Ga0078894_1107994723300005662Freshwater LakeMPGTTPAGNYNVPAMGEGQSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0078894_1111613513300005662Freshwater LakeMPGTTPAGNYNVPAMGEGQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSK
Ga0078894_1116571613300005662Freshwater LakeMPGTTPAGNSVTPAMGEGQTAGRRGTRKGPSAKALKRVLKSHGLKTTGKKSTLRARAKKAHILSKA*
Ga0078894_1120653923300005662Freshwater LakeMPETTPAGNSTMPAMGQSAGRRGTRKGPSAKALKRVLKGHGLKTTGKKSTLRARAKRAHLLSKA*
Ga0078894_1153983923300005662Freshwater LakeAGNSVTPAMGEGQTAGRRGTRKGPSAKALKRVLKGHGLKTTGKKATLRARAKKAHLLSKA
Ga0078894_1173806423300005662Freshwater LakeMTGTTPAGNYTAPAMGESQSAGRRGTRKGPSAKALKRVLKSHGLKTTGKKSTLRARAKKAHILSKA*
Ga0075464_1091177723300006805AqueousMDSDSPAPVDAGRRRTRRSKGPSAKALSRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0108970_1035787523300008055EstuaryMPGTTPAGNYTAPAMGEEQSAGRRRTRKGPSAKALKRVLKGHGLKTTGKKSTLRARAKKAHLLSKA*
Ga0114973_10002619133300009068Freshwater LakeMPEHTTPAGNSVAPAMGQTAGRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA*
Ga0114973_1010872623300009068Freshwater LakeMPEHTTPAGNSVTPAMSAGRRRTHKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0114962_1001171363300009151Freshwater LakeMTPAGNSTMPAMGTEQSAGRRRTRRSGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0114962_1011702323300009151Freshwater LakeMHMPAAPSPSPVMGGRRRTHRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0114962_1015332523300009151Freshwater LakeMHMTPATAGRRRTRRAGPSAKALKRVLKAHGLKASGRKATLRARAKKAHILSKA*
Ga0114962_1022362213300009151Freshwater LakeMQTPGVTGMTVAPAMAQAGGARKHTAKALKRVLKKHGLKCTGRKATLRARAKKAHLLSKV
Ga0114980_1000628733300009152Freshwater LakeMPGHTTPAGNSVAPAMGESQTAGRRGTRKGPSAKALKRVLKGHGLKTTGKKSTLRARAKKAHLLSKV*
Ga0114963_1000180053300009154Freshwater LakeMPTPAGNVDLPAMPAPAGSPGAVGGRRKTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0114963_1004873623300009154Freshwater LakeMPAMGTEQSAGRRRTRRSGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0114977_1018176413300009158Freshwater LakeMPEHTTPAGNSVTPAMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA*
Ga0114978_1038084613300009159Freshwater LakeMSAGRRGTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLGKA*
Ga0114978_1071426313300009159Freshwater LakeTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA*
Ga0114978_1087244813300009159Freshwater LakeNKMPSTMSPAPVSANTTGGRRRTRKGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0114981_1001136243300009160Freshwater LakeMPGHTTPAGNSVAPAMGESQTAGRRGTRKGPSAKALKRVLKGHGLKTTGKKSTLRARAKKAHLLSKA*
Ga0114975_1002910943300009164Freshwater LakeMPATLSPDSLSATGGRRRRGPTMKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0114975_1034085923300009164Freshwater LakeMSAALSPADVAVTGGRRRRGPTMKALKRVLKSHGLKSSGRKATLRARAKKARLLSKA*
Ga0114974_1073873713300009183Freshwater LakeMPGHTTPAGNSVAPAMGESQTAGRRGTRKGPSAKALKRVLKGHGLKTTGKKSTLRARAKK
Ga0114976_1017285913300009184Freshwater LakeMQTTPAGNSVTPAMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLGKA*
Ga0114958_1000145923300009684Freshwater LakeMADSASTTPAGNSVAPAIGGRRKTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0114960_1003441933300010158Freshwater LakeMPMPAAPSPSPVMGGRRRTHRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0136644_1035838413300010334Freshwater LakeMPAAPSPSPVMGGRRRTHRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0136644_1049200123300010334Freshwater LakeMSAPAPATAGRRRTRRAGPSAKALKRVLKAHGLKASGRKATLRARAKKAHILSKA*
Ga0114986_102464613300010374Deep SubsurfaceMPGTTPAGNYTAPAMGEEQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA*
Ga0133913_10006719143300010885Freshwater LakeMAETTPVGNTGAPAVGGRGRTRRGPTAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA*
Ga0133913_1051267433300010885Freshwater LakeMPETTPAGNSSVPAMGTEQTAGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA*
Ga0133913_1280464523300010885Freshwater LakeMQGTTPAGNYNAPAMGEGQTAGRRGTRKGPSAKALKRVLKSHGLKTSGKKSTLRARAKRAHILSKA*
Ga0133913_1291689523300010885Freshwater LakeMPTVSPSGNSSKHAFGGEMGGGRRRRGPTAKSLKRVLKGHGLKSSGRKATLRARAKKAHLLSEA*
Ga0119951_103566423300012000FreshwaterMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLGKA*
Ga0164292_1010279523300013005FreshwaterMPETTAAGNYNLPGMGEGQSAGRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA*
Ga0164294_1000851683300013006FreshwaterMPGHTTPAGNSVTPAMGEGQTAGRRGTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA*
Ga0136641_101872253300013286FreshwaterAGRRRTRRAGPSAKALKRVLKSHGLKASGRKATLRARAKKAHLLSKA*
Ga0136641_104348043300013286FreshwaterAGRRRTRRAGPSAKALKRVLKSHGLKASGRKATLRARAKKANILSKA*
Ga0136641_104389843300013286FreshwaterMHMTPATAGRRRTRRAGPSAKALKRVLKSHGLKASGRKATLRARAK
Ga0136641_107702223300013286FreshwaterMHMTPTTAGRRRTRRAGPSAKALKRVLKSHGLKASGRKATLRARAK
Ga0170791_1273923513300013295FreshwaterSVTPAMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA*
Ga0187844_1025703313300018868FreshwaterMQGTTPAGNSVTPAMGEGQTAGRRGTRKGPSAKALKRVLKSHGLKTSGKKSTLRARAK
Ga0207193_1000056383300020048Freshwater Lake SedimentMPAMGTEMSAGRRRRGPTMKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0211729_1018410923300020172FreshwaterMQGTTPAGNSSAPAMGEGQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0211729_1052911263300020172FreshwaterMAPPVTPAGNSTAPAMQAPQAGGRRGTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKARLLSKA
Ga0211731_1001453133300020205FreshwaterMAPPVTPAGNSTAPAMQAPQAGGRRGTRKGPSAKALKRVLKSHGLKSSGK
Ga0211731_1078561923300020205FreshwaterMPSTLAPAPVSAGATSGGRRRRSGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSK
Ga0214921_10006501173300023174FreshwaterMPETTPAGNSTVPAMGQSAGRRTRKGPSAKALKRVLKGHGLKTTGKKATLRARAKRAHLLSKA
Ga0214921_1001571763300023174FreshwaterMPGMTPAGNVDVPAMGQSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0214919_10000522263300023184FreshwaterVPAMGTEQSAGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0214919_1000501843300023184FreshwaterMPDVTPAGNSYKPALGGDMGGGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0208620_100060073300025368FreshwaterMSPAPVQGGRRHTRRAHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0208738_100154023300025379FreshwaterMTPAGNEVKPALGDDMGGGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSK
Ga0208503_1000079103300025388FreshwaterMAPTPVSPAGNSQVPAMGGRRGTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0208864_100202043300025578FreshwaterMPETTPAGNAVAPPMGGRGRTRRGPSAKALKRVLKAHGLKSSGKKATLRARAKKAHILSK
Ga0208507_106458313300025648FreshwaterPAGNSQVPAMGGRRGTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0209188_1000095973300027708Freshwater LakeMPAAPSPSPVMGGRRRTHRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0209188_103401733300027708Freshwater LakeMHMTPATAGRRRTRRAGPSAKALKRVLKAHGLKASGRKATLRARAKKAHILSKA
Ga0209599_1000054773300027710Deep SubsurfaceMPGTTPAGNYTAPAMGEEQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA
Ga0209599_1001157523300027710Deep SubsurfaceMQGTTPAGNYNAPAMGEGQSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA
Ga0209499_103010933300027712Freshwater LakeMADSASTTPAGNSVAPAIGGRRKTRRGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0209297_112962323300027733Freshwater LakeMQTTPAGNSVTPAMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLGK
Ga0209297_126484113300027733Freshwater LakeMQTTPAGNSVTPAMSAGRRGTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSK
Ga0209087_100263123300027734Freshwater LakeMPEHTTPAGNSVTPAMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA
Ga0209085_103742423300027741Freshwater LakeMPAMGTEQSAGRRRTRRSGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0209355_101294043300027744Freshwater LakeMPSTMSPAPVSASTTGGRRRTRKGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSK
Ga0209444_1009488823300027756Freshwater LakePDSATGGRRHTRRHGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0209296_102153623300027759Freshwater LakeMPSTMSPAPVSANTTGGRRRTRKGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSK
Ga0209088_10000254153300027763Freshwater LakeMPATLSPDSLSATGGRRRRGPTMKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0209500_1044791723300027782Freshwater LakeMGTEQTAGRRRRGPTAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0209358_1013728623300027804Freshwater LakeAPVSSMPGGRRRTRKGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0209400_123357313300027963Freshwater LakeMPEHTTPAGNSVAPAMSAGRRGTRKGPSAKALKRVLKSHGLKSSGKKATLRAR
Ga0209191_124087923300027969Freshwater LakeMPGHTTPAGNSVAPAMGESQTAGRRGTRKGPSAKALKRVLKGHGLKTTGKKSTPC
Ga0209191_129700413300027969Freshwater LakeMSAALSPADVAVTGGRRRRGPTMKALKRVLKSHGLKSSGRKATLRARAKKARLLSKA
Ga0209401_100110033300027971Freshwater LakeMPEHTTPAGNSVAPAMGQTAGRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA
Ga0209298_1007728333300027973Freshwater LakeMPGHTTPAGNSVAPAMGESQTAGRRGTRKGPSAKALKRVLKGHGLKTTGKKSTLRARAKKAHLLSKV
Ga0247723_100543353300028025Deep Subsurface SedimentMPGTTPAGNYTAPAMGEEQSAGRRRTRKGPSAKALKRVLKGHGLKTTGKKATLRARAKRAHLLSKA
Ga0247722_10000464233300028027Deep Subsurface SedimentMQGTTPAGNYNAPAMGEGQTAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKRAHLLSKA
Ga0304728_100518753300028393Freshwater LakeMTVAPAMAQAGGARKHTAKALKRVLKKHGLKCTGRKATLRARAKKAHLLSKV
Ga0304730_108570313300028394Freshwater LakeMSAGRRRTRKGPSAKALKRVLKSHGLKSSGKKSTLRARAKKAHLLSKA
Ga0335029_0363438_215_3763300034102FreshwaterMGGEQSAGRRRTARKGPSAKALKRVLKSHGLKSSGKKATLRARAKKAHLLSKA
Ga0335068_0265042_532_6783300034116FreshwaterMPGGRRRTRRGPSAKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0335064_0000111_3632_38263300034357FreshwaterMPEHTTPAGNSVAPAMGQTAGRRTRKGPSAKALKRVLKGHGLKTSGKKATLRARAKRAHLLSKV


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