Scaffold Ga0209188_1000085

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000085
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107984
• Total Scaffold Genes: 163
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (78.53%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Associated Families: 16

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F004431	Metagenome / Metatranscriptome	438	Y
F012455	Metagenome / Metatranscriptome	280	Y
F014142	Metagenome / Metatranscriptome	265	Y
F015208	Metagenome / Metatranscriptome	256	Y
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F029434	Metagenome / Metatranscriptome	188	Y
F037030	Metagenome / Metatranscriptome	168	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000085101	F028168	AGG	MNLTEKPLIELISEVTEFNDIKEYMNDPDLDYALDLIIKLITKPDVPSSKAPDLIIKMQALGAKFAMLSRFYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARYGA
Ga0209188_100008513	F014142	AGGAG	MNSLTVVVEPTHPMASSNTKSNSIFRLANGNYISRMAYVHLVASEGLISHRYLTPSESQWVFANRVS
Ga0209188_100008514	F004431	N/A	MKMKIEYSLWDGATLLGVGFIASSADEMNKTVAELQKVSKNVVAHLRKVEIND
Ga0209188_100008516	F000684	AGGA	MTLSGYTYQIGDLFTTSKTGVTGRIASFSPISNKVTRVSLVLANGSRRFAMVKTSK
Ga0209188_100008519	F000447	GAG	MGYIEIFRINEEGAGWVDLSEATPAEMLDIEIGLFQEGAL
Ga0209188_100008520	F029434	GGAG	MKKYTFGVWLDIDAENDDQALSIFDNVIKNNFVSDSYCFEWKEVE
Ga0209188_100008525	F015208	GAGG	MYKITVTYDEQTSPYWSGQYSDELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVER
Ga0209188_100008527	F012455	GAGG	MEKVKRIQELRRSNAATAIPSKKKYNRKRKYKNKFE
Ga0209188_100008542	F000263	AGG	MEKQELAPHLQRLVNYKINPLDIMHGELKNLMLIWEQEYSNAVEVEEENDYSDAMDGFERKYAEGFLDALTALYKMTYDLSFAIADREAKG
Ga0209188_100008568	F064358	AGAAG	MQCFSCGKPKNELHPKKSDIINGVTLLMCQTCIDAKFEPRWVIILSGRQNGVDSVKDYIVKRRYIGRIIDAEELIA
Ga0209188_100008570	F028070	N/A	MAKKIRDVKVPVKGLILDVRARPNYLALTVYESNIMEYNESQRMQLMEYLLMIRNLIMSYGTPCEIEGMKYTDEQARKQRRAT
Ga0209188_100008574	F019426	N/A	MNKDGNPVLVHFRKEKMRVIVFGSKDWSDYNDLIRQLTVLIDDRKHFYPEDTEYTFVHTGMRGAENMVTEYIGKTEKFLRQKGYKIKEEIIKDKSGLADHSLIEAMPDFALVFGDSPRNRSCVKLLEAYAVPHRYIKK
Ga0209188_100008577	F041564	AGGA	MEYDPSNEEHREAMEHLIEEGAAILDGIDEDGEPVYKFDMNVLEEVMPELHQAMMDDMDKVLIDLYQKGLIEISYDENLNAQMSVSLEGRQALEDAGFDMDGSEEEEY
Ga0209188_10000859	F037030	AGGAGG	MNNENKARIRTAWTMICVMILTLIFGVDQQAHAAMKEAIVYNKNILYINKYNNLVNIKDIINIDYNNILNKRMHKTLYLINDLSSRSTFLMPDYSHELNLKTTRVDKRVIISRLANALKSTETGGAGAYYRKSRSSSACGAYQYMPSTWNNYKGYKDACHAPEWVQDQKIILELNATYNKYHDWEKAIAAHLLPSRAGNKSTWNKPVPGNPTVRQYVNSVLNRANLVTA
Ga0209188_100008590	F042147	AGGA	MLGNGTMRTIEDEKDIYISLTQLCEYFTQSVVNMQKEIEEADPKSKRYAAGLLDMMHTIADEMVQLGKFEAQRRLINSPEDLLKMIDNNPFGKVE
Ga0209188_100008597	F071905	GGAG	MPSMKLYDSKDWCYKRYVVEKKTILDMAMEAKCSHMTIQRSLQRWGLIKQQRKWTK