Scaffold Ga0209188_1000071

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000071
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122586
• Total Scaffold Genes: 163
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (61.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020169	Metagenome	225	Y
F024781	Metagenome / Metatranscriptome	204	Y
F028513	Metagenome / Metatranscriptome	191	Y
F036593	Metagenome / Metatranscriptome	169	Y
F054873	Metagenome	139	Y
F074374	Metagenome	119	Y
F076069	Metagenome / Metatranscriptome	118	Y
F080028	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000071134	F028513	AGGAG	MLKQLAEYFQKMFQDFSKPQTYQSALEEYIVRNAPQDMCDVDRLTRQFDMMQSRRGW
Ga0209188_1000071135	F076069	GAGG	MSILQAIYNFLSEVGRARAASHLARLGDHEAARRVMLMDLK
Ga0209188_1000071159	F054873	N/A	MRAREFVINVPITIKINGDGDPEVDMTNSDEPIDPSVPIEDPVMVSPLQQQLELQKAQVGKISPIIKDLTQDELDPETKELP
Ga0209188_10000715	F080028	GAGG	MIDYLLAFFAMFFTDVFYTYYLKAVHEEHVLRASSWATIVYVVAAVAIIEYNSNHMLLIPAAAGAFCGTWVGMKIRKR
Ga0209188_100007177	F020169	AGAAG	MSSTVRIAWGREFDNEQKWNEVCAWAVEYFGLPGDRFHTRVDTEHMDFVFNSNKDALMMALMWNAPIVPNNDLTVEHVGKMINV
Ga0209188_100007178	F024781	GGAG	MIEIFIPVLFICMNGNCNFMQAQTVYRSEAQCRASIDSQKIHMLEVAEQANAGKMTILEGTCIDAKIEDPKKQT
Ga0209188_100007192	F074374	AGG	MSKTATASLAPFDPSAGLADKRIPITDVAKQISKRIGEKVQNKADVSVQDVLKFGWVPADKILINYKRQRWPEPKHMKKLLGKWDIRCVTPLQCRYDPIEDKYYGADGQQHMTVWLLKYGMLTHIPCFYVESADENVESIQLLALNTDSEPMAKFFIHQQKIMMGDKHAIALEKAVTDANCETAYKKRSPGCITHVSHLQDAYENYGAGALTLVLNKMRQFWPQDKIEMPTALGFLKLREIMVDDGLWNDSTFNDVVFECSNYAETNKDLHLGINHAFQTTYPTNYKGMGVREKIASGIIDIYEKAKGNKLCDKPFDISMPKVSVHVEEEMTEEA
Ga0209188_100007199	F036593	GGAG	VINLNFSMAMPWRSAKIWDILWNKSGFISQNKAWEFNGYRTGHIINVDFHWTLRGDHAGARLMFGVFGYEIELEFYDTRHWNYDANTWECYK