Scaffold Ga0209188_1000050

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000050
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 138091
• Total Scaffold Genes: 247
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 146 (59.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013086	Metagenome / Metatranscriptome	274	Y
F020169	Metagenome	225	Y
F028806	Metagenome	190	Y
F031870	Metagenome / Metatranscriptome	181	Y
F061857	Metagenome	131	Y
F091315	Metagenome	107	Y
F098537	Metagenome	103	N
F099158	Metagenome	103	Y
F103236	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000050104	F099158	AGGA	MILQDLEYIFKPQVDEGTTKLYFMLIDGEHTMMERHNASDIESLVPMLDSFQYAGTEIRIPRFIK
Ga0209188_1000050121	F028806	N/A	MNKFTDFPEQPRIMTNDEGEKYFNNMVSQINDFKPNEIIAVARSGFSYAMWTAQILKLPLGAYWSERGELITGSDPERIVFVDDNILSGTTYKDTKLFMSRYYPNTEWRWAVLFSDWLTPELVRNEIIQGVRLPYFAEEPMWGSKKVSVDYGVRFRDE
Ga0209188_100005015	F098537	N/A	MNKFLAIIVATLLSGCTVLDAYLMTHYDPNEYKLITDVRAEAQLFKAQCDDADQSKLNAVKLANDTQLFVLYSEHVPRNDDVISASKDLHTLAQGLADQYSKARVSPGFCKIKFTAVESSADKMQKVIGSRPR
Ga0209188_1000050193	F031870	GAGG	VKDYTDYMVLPCGGVAYYDEPVHGMNYFCAQCGTSVGSVGMPRACKREMDKWDLIKLLGGKGWDYFAEPDEFF
Ga0209188_1000050200	F020169	GAGG	MASTVRIPWKREFDNEQMWNEVCAWAIEYFGLPGDRFQTHANVNYMDFVFKSNKDALVMALMWNAEIVPDNDLTVEYVGGLINV
Ga0209188_1000050208	F103236	GGA	MIYLSFGLSNPWGKPFANLWNRSGMITKHKAWEAELLRTRELVGFHFSYTARQSHAGLNLELGLFGYSISFQIYDTRHWDHNTNTWEAYD
Ga0209188_100005036	F091315	GGAGG	MSNNNVEAVVTIEEYDEENDYGPDDFGFVLGPDGELKSFMIPEHLMEDPPEEVLMILSIFGIDNIHELENKTLH
Ga0209188_100005063	F061857	AGG	MEVVRYGDKCVVKQDNSSKSVEAEVLEFKEKKNLIVVLNKSVKLNMIWNGKLYEGKMAGIDFNTTGPTISRSTTGR
Ga0209188_100005075	F013086	GGAG	MSEEPELIGYTEREQVFEPLYAPPRGYIVTQAFILCKYCRGAIYPCMGPKYDAVCFACYDEKTK