NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1002290

Scaffold Ga0209581_1002290


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1002290 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18713
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013999Metagenome / Metatranscriptome266Y
F052529Metagenome142N
F094175Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_100229012F013999AGGAGGMFRVIGRKRRIQLYRFARAVGSGIGMLFLASPAFAQIGGDRVSSFLSNTLSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0209581_100229013F094175GGAGGVIAWAIVMRLIGDHIHRVFLGFVPVSTVMTYGSVALLVGLIRWAKHGKPRGYLVAWIQHYFRGKAHCARFGVSELPYLVEDEQ
Ga0209581_100229018F052529GAGGMRQIAGFALVLVLVGTAGIPCFAQSKPMAAMKQPGGMQPSNANDSGVVPLSYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIIKQIEVPPAKGKTPIETNMLVYMASGRVVNITLKAGRVDNTAYSIDYFLPPAKSLDDPPPVSKEELEKRFQEQERSELAETMVAEIKEHPKSQPGVVAGGLDLRFYSVKRLGVLALVSFDVENTSSETVDLEDPQVNLITASNNPKDHKKPLVKTEPVEINQSVVSSKQLSAGARAVCLIAFKPPIHDSDQQVVLSISNRAMADKPATYRLE
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