Scaffold Ga0209581

Basic Information
Taxon OID	3300027706 Open in IMG/M
Scaffold ID	Ga0209581_1000280 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209581_1000280 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	139539
Total Scaffold Genes	154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	121 (78.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

139539

Total Scaffold Genes

154 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

121 (78.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F046796	Metagenome / Metatranscriptome	150	Y
F050849	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_100028035	F046796	GGAGG	VDVLENILERISETQEQREVYLRQAEAEEQKIAKLEQMYYLLEDPATQELMKDVVVGMAVQNGVPVPNGNKGDAGEKHYVGMQRVREYVTAMPANREFTVHDVFTKSIEHMPSTPKIRHPEFEKQRKASISLALTSMAKAGDIEVVKQGRGREATVYRKQEGK
Ga0209581_100028045	F050849	GGA	MPIRADYFEREAGHIVVCLILIAMGAGLWLLKVPKGEDLIPFALGVLGRSMVGRKNAPEDNK
Ga0209581_100028060	F030458	N/A	MPFQAKITRARFVLGPFTSEDMLAIGNVVVDSIKDRLHKGLNVNDQQAKPLKPGRNGHRGYPDYKSARGLQPFRDWFWTGHTLRALKVKQASENRCVIGFIDPNADLIAHVNNLRERAFGISPKDRQVMVAAIKTVLRTARVISVRKAA
Ga0209581_100028063	F031889	AGGAG	MYGSIPNEGIAIRVPNPPKTARVRLPTTEEMLGRLAQQKSIRRTIGRRKSQTEYVSNPKADLALFNQIRLDKDGPEFDEFEAGNAISKLTFCDVTGCERVGDEYQITLKTPFGDTVHTMKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIEPAMDLYDSTVSKIEGYADGYKAADVPPHHKSAVVVELVQAIEDMDPSLDPNS
Ga0209581_100028066	F025048	AGGA	MLNASPIVDAIAGVLQTIPDLAAAMTVLEGQSPVCRIEAFHYRLGMDYRLAQRIYKMPAPSMLVAWDGTQGGNFDGQTIWKHRFNVYFRMGNAAGLSEPVGYEDLWSILCNQPPAGSPVGIRYMHLYPGLDIMDTPSVAHALDEDLQDRFVGTLVIPEIGDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209581_1000280

Overview

Ecosystem & Geography

Associated Families

Sequences