Scaffold Ga0209581_1000002

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000002
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1458151
• Total Scaffold Genes: 1560
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 947 (60.71%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002967	Metagenome / Metatranscriptome	517	Y
F002992	Metagenome / Metatranscriptome	515	Y
F003246	Metagenome / Metatranscriptome	498	Y
F004844	Metagenome / Metatranscriptome	421	Y
F005031	Metagenome / Metatranscriptome	414	Y
F005922	Metagenome / Metatranscriptome	386	Y
F007034	Metagenome / Metatranscriptome	359	Y
F009094	Metagenome / Metatranscriptome	323	Y
F010130	Metagenome / Metatranscriptome	308	Y
F014125	Metagenome / Metatranscriptome	265	Y
F033149	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_10000021046	F003246	GAG	VASTPRDSFRPADAVAGLMAAGALFLGVFELFYRPFRLAPAAVILILIATIMSKEQQRLIALALAVVGICFVVGTALQVITNHPLY
Ga0209581_10000021075	F004844	GGA	MHTMTRPGERVSVFLFALALLALFVVLTFAAGYALGRILL
Ga0209581_10000021108	F002992	AGG	MSLRTAPVVEHAALPGGGTVTVWVGVPDDPYIEDKSQLTTVDLQLHEGRSVVASVSTVLDPDQDGEGRQLARDVKEALEAGRIGLHAHELEPFADRLR
Ga0209581_1000002130	F009094	N/A	MAMCHVCRRSLLAGERYRTWRWARRDRTVCAVCEPQARDAGWIRVVDGFEQVRVTGLTQTVRRVA
Ga0209581_10000021338	F002967	GGA	MSAEPTVVWLSPSATWFACLCEHCLEAARLEGALFAEALRSASVRGPIAAEASVSSVRCPAGHEVVLRRVERPPALAHPDERQLQLA
Ga0209581_1000002144	F005031	AGGGGG	MAGVRRGARSVLKWFAPLYVVAIVVQVFLAGEGIFGMKNVSDSDHCNKHGVQCIANSKDLDAHRALGFILTMPGALLFLIVALLAWHPNTRVRAVSIVVPILTFVQMILAGAGRWAGGLHPVNAFLVLALYGWLTYRLRQEEPATSQAAAPVTVPAA
Ga0209581_10000021534	F033149	GAGG	MRSRAPLGLGGFLALPVFFGALMAASLAVEKPRVVEWSRPHGHLARIFHDPTASNEARIWLLALVPPLLLVLAGWFASYLPFGIYLTCAAAIIDAVALTLRLHRWEVHHTARFPYGEDLLADQTNSSSLLKGEWEHDAAQTVRSFEHYTIGLAVAAALISLFLTYRRRRAPVLGVPSALQQTGGAPTSTGV
Ga0209581_1000002696	F010130	N/A	VQNPELLLAISTGIAVEVAHLRWIVLTQWRCRACGVPHLHCACKPAWLRRLL
Ga0209581_1000002772	F005922	GGAGG	MSRDGGVRADDRLVTLLSQWLVGTLGNDELRREVEAADGDELAPGQRRAVEELLAELRAALPGERAGLQVAVREALEALAYGE
Ga0209581_1000002950	F014125	GAGG	LQFQIGKRGGRPPGVRPEFTTVGDDRIIGSTLWLDEDGKRIERFQVLTTRDGKIVDMQGFETRRQAERFARRRTF
Ga0209581_1000002951	F007034	AGG	MVDAEMIEQLRFAAEALGRGDPGPFASLFAEDAEWRGVSRGHLWWKQTPS