Scaffold Ga0209816_1021664

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1021664
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3390
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F059342	Metagenome / Metatranscriptome	134	N
F084724	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10216641	F084724	N/A	ITLVSLDHMEEYLFITEEAGDISEDTYDLRMKAVRTARTKIKQL
Ga0209816_10216648	F059342	N/A	MSKTKYNGYTDFPTWKVFHETLSNITFDKYVTSEELKEISLDVVLFGFKMQFGSHLVEEFARIFIESADFQDIADSINNDIK
Ga0209816_10216649	F001217	N/A	MSKTKFNGFEKYFIQTALRHAIEEAEEDVLAVEADGNRSLYAPGYFTHLGNEIINKVNSMTLKKYQD