NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F084724

Metagenome / Metatranscriptome Family F084724

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084724
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 52 residues
Representative Sequence MQLSNYEKNVLLVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN
Number of Associated Samples 83
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 5.36 %
% of genes near scaffold ends (potentially truncated) 22.32 %
% of genes from short scaffolds (< 2000 bps) 82.14 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (67.857 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(22.321 % of family members)
Environment Ontology (ENVO) Unclassified
(77.679 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(66.964 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.09%    β-sheet: 0.00%    Coil/Unstructured: 46.91%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.75
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.29.16.1: IVS-encoded protein-liked2gsca12gsc0.8645
a.29.16.1: IVS-encoded protein-liked2rlda12rld0.84711
a.7.12.0: automated matchesd4q25a_4q250.84346
a.7.12.1: PhoU-liked1sumb_1sum0.82265
a.127.1.0: automated matchesd6iemb_6iem0.80821


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF00268Ribonuc_red_sm 0.89
PF00166Cpn10 0.89
PF04542Sigma70_r2 0.89
PF13662Toprim_4 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 0.89
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.89
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.89
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.89
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.89
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.89


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A67.86 %
All OrganismsrootAll Organisms32.14 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10065458All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300000116|DelMOSpr2010_c10137193Not Available857Open in IMG/M
3300000116|DelMOSpr2010_c10235337Not Available566Open in IMG/M
3300000119|KGI_S1_ANT01_95mDRAFT_c10026042All Organisms → Viruses → Predicted Viral2378Open in IMG/M
3300000119|KGI_S1_ANT01_95mDRAFT_c10072962Not Available1100Open in IMG/M
3300000121|TDF_OR_ARG04_113mDRAFT_c1015082Not Available930Open in IMG/M
3300001460|JGI24003J15210_10169665Not Available539Open in IMG/M
3300001935|GOS2223_1019270All Organisms → Viruses → Predicted Viral1501Open in IMG/M
3300004097|Ga0055584_102256911Not Available554Open in IMG/M
3300004461|Ga0066223_1103550Not Available770Open in IMG/M
3300004461|Ga0066223_1377638Not Available509Open in IMG/M
3300006029|Ga0075466_1172001Not Available548Open in IMG/M
3300006164|Ga0075441_10141491Not Available909Open in IMG/M
3300006164|Ga0075441_10193691Not Available758Open in IMG/M
3300006164|Ga0075441_10230276Not Available685Open in IMG/M
3300006164|Ga0075441_10270469Not Available623Open in IMG/M
3300006193|Ga0075445_10019696All Organisms → cellular organisms → Bacteria2899Open in IMG/M
3300006752|Ga0098048_1025767All Organisms → Viruses → Predicted Viral1938Open in IMG/M
3300006752|Ga0098048_1106536Not Available846Open in IMG/M
3300006793|Ga0098055_1098813All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300006793|Ga0098055_1289440Not Available613Open in IMG/M
3300006922|Ga0098045_1022446Not Available1674Open in IMG/M
3300006922|Ga0098045_1143371Not Available552Open in IMG/M
3300006947|Ga0075444_10080094All Organisms → Viruses → Predicted Viral1466Open in IMG/M
3300006947|Ga0075444_10099367All Organisms → Viruses → Predicted Viral1275Open in IMG/M
3300006947|Ga0075444_10225453Not Available746Open in IMG/M
3300006990|Ga0098046_1006505All Organisms → Viruses → Predicted Viral3390Open in IMG/M
3300007231|Ga0075469_10219768Not Available505Open in IMG/M
3300007540|Ga0099847_1173495Not Available635Open in IMG/M
3300007543|Ga0102853_1021569All Organisms → Viruses → Predicted Viral1059Open in IMG/M
3300008221|Ga0114916_1107882Not Available666Open in IMG/M
3300008929|Ga0103732_1005551All Organisms → Viruses → Predicted Viral1515Open in IMG/M
3300008930|Ga0103733_1002357All Organisms → Viruses → Predicted Viral2104Open in IMG/M
3300008999|Ga0102816_1105615Not Available861Open in IMG/M
3300009071|Ga0115566_10174358Not Available1328Open in IMG/M
3300009428|Ga0114915_1124901Not Available747Open in IMG/M
3300009428|Ga0114915_1138917Not Available697Open in IMG/M
3300009428|Ga0114915_1174470Not Available601Open in IMG/M
3300009441|Ga0115007_10820280Not Available630Open in IMG/M
3300009544|Ga0115006_10800946Not Available830Open in IMG/M
3300010149|Ga0098049_1072371All Organisms → Viruses → Predicted Viral1088Open in IMG/M
3300010430|Ga0118733_109162738Not Available510Open in IMG/M
3300011118|Ga0114922_10213289All Organisms → Viruses → Predicted Viral1626Open in IMG/M
3300011247|Ga0151657_1036952Not Available532Open in IMG/M
3300012920|Ga0160423_10000099Not Available59647Open in IMG/M
3300013098|Ga0164320_10074507Not Available1428Open in IMG/M
3300017708|Ga0181369_1087730Not Available656Open in IMG/M
3300017719|Ga0181390_1179566Not Available518Open in IMG/M
3300017725|Ga0181398_1014320All Organisms → Viruses → Predicted Viral2001Open in IMG/M
3300017740|Ga0181418_1104313Not Available687Open in IMG/M
3300017742|Ga0181399_1063189Not Available949Open in IMG/M
3300017776|Ga0181394_1195399Not Available617Open in IMG/M
3300017783|Ga0181379_1164383Not Available787Open in IMG/M
3300021085|Ga0206677_10263421Not Available705Open in IMG/M
3300021185|Ga0206682_10054044All Organisms → Viruses → Predicted Viral2173Open in IMG/M
3300021375|Ga0213869_10079162All Organisms → Viruses → Predicted Viral1637Open in IMG/M
3300021389|Ga0213868_10213386Not Available1149Open in IMG/M
3300021957|Ga0222717_10166812All Organisms → Viruses → Predicted Viral1328Open in IMG/M
3300022053|Ga0212030_1022403All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium856Open in IMG/M
3300022201|Ga0224503_10010364All Organisms → Viruses → Predicted Viral2651Open in IMG/M
(restricted) 3300024059|Ga0255040_10536715Not Available503Open in IMG/M
(restricted) 3300024062|Ga0255039_10174895Not Available889Open in IMG/M
(restricted) 3300024264|Ga0233444_10118585All Organisms → Viruses → Predicted Viral1343Open in IMG/M
(restricted) 3300024264|Ga0233444_10138105All Organisms → Viruses → Predicted Viral1201Open in IMG/M
3300024343|Ga0244777_10553789Not Available701Open in IMG/M
3300024346|Ga0244775_10923238Not Available692Open in IMG/M
3300025083|Ga0208791_1001725Not Available7868Open in IMG/M
3300025083|Ga0208791_1031861Not Available993Open in IMG/M
3300025083|Ga0208791_1076628Not Available545Open in IMG/M
3300025103|Ga0208013_1000122Not Available57694Open in IMG/M
3300025120|Ga0209535_1113458Not Available939Open in IMG/M
3300025276|Ga0208814_1083271Not Available843Open in IMG/M
3300025570|Ga0208660_1138002Not Available505Open in IMG/M
3300025640|Ga0209198_1198810Not Available511Open in IMG/M
3300025759|Ga0208899_1158379Not Available765Open in IMG/M
3300027672|Ga0209383_1230506Not Available520Open in IMG/M
3300027704|Ga0209816_1021664All Organisms → Viruses → Predicted Viral3390Open in IMG/M
3300027704|Ga0209816_1040885All Organisms → Viruses → Predicted Viral2185Open in IMG/M
3300027704|Ga0209816_1053967Not Available1789Open in IMG/M
3300027714|Ga0209815_1024449All Organisms → Viruses → Predicted Viral2450Open in IMG/M
3300027714|Ga0209815_1091748Not Available1023Open in IMG/M
3300027771|Ga0209279_10212804Not Available579Open in IMG/M
3300027810|Ga0209302_10231292Not Available875Open in IMG/M
3300027833|Ga0209092_10027544Not Available3702Open in IMG/M
3300027833|Ga0209092_10341653Not Available799Open in IMG/M
(restricted) 3300028045|Ga0233414_10490316Not Available577Open in IMG/M
3300031140|Ga0308024_1056658All Organisms → Viruses → Predicted Viral1029Open in IMG/M
3300031143|Ga0308025_1118082Not Available963Open in IMG/M
3300031167|Ga0308023_1005288All Organisms → Viruses → Predicted Viral2980Open in IMG/M
3300031167|Ga0308023_1082296Not Available598Open in IMG/M
3300031589|Ga0307996_1000041Not Available33577Open in IMG/M
3300031589|Ga0307996_1008868All Organisms → Viruses → Predicted Viral2640Open in IMG/M
3300031589|Ga0307996_1054322All Organisms → Viruses → Predicted Viral1061Open in IMG/M
3300031589|Ga0307996_1070954Not Available924Open in IMG/M
3300031599|Ga0308007_10027443All Organisms → Viruses → Predicted Viral2209Open in IMG/M
3300031601|Ga0307992_1075711All Organisms → Viruses → Predicted Viral1399Open in IMG/M
3300031602|Ga0307993_1012924All Organisms → Viruses → Predicted Viral2134Open in IMG/M
3300031602|Ga0307993_1028951All Organisms → Viruses → Predicted Viral1387Open in IMG/M
3300031602|Ga0307993_1174282Not Available539Open in IMG/M
3300031629|Ga0307985_10164703Not Available879Open in IMG/M
3300031629|Ga0307985_10368271Not Available556Open in IMG/M
3300031629|Ga0307985_10388455Not Available539Open in IMG/M
3300031630|Ga0308004_10073747All Organisms → Viruses → Predicted Viral1475Open in IMG/M
3300031656|Ga0308005_10189562Not Available550Open in IMG/M
3300031658|Ga0307984_1084102Not Available942Open in IMG/M
3300031660|Ga0307994_1232077Not Available569Open in IMG/M
3300031687|Ga0308008_1023561All Organisms → Viruses → Predicted Viral1543Open in IMG/M
3300031688|Ga0308011_10124855Not Available784Open in IMG/M
3300031688|Ga0308011_10232878Not Available553Open in IMG/M
3300031689|Ga0308017_1113700Not Available551Open in IMG/M
3300031706|Ga0307997_10202204Not Available734Open in IMG/M
3300031851|Ga0315320_10044693All Organisms → Viruses → Predicted Viral3475Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine22.32%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine17.86%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine13.39%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater7.14%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.36%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean4.46%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.68%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.68%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.68%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine2.68%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.68%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.79%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.79%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.79%
Ice Edge, Mcmurdo Sound, AntarcticaEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica1.79%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.89%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.89%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.89%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.89%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.89%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.89%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.89%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.89%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000119Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5mEnvironmentalOpen in IMG/M
3300000121Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3mEnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001935Marine microbial communities from Northern Gulf of Maine, Canada - GS007EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007543Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3EnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300008929Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1AEnvironmentalOpen in IMG/M
3300008930Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1BEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009544Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M MetagenomeEnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300011247Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.02EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300013098Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cmEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022201Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027771Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027810Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300031140Marine microbial communities from water near the shore, Antarctic Ocean - #420EnvironmentalOpen in IMG/M
3300031143Marine microbial communities from water near the shore, Antarctic Ocean - #422EnvironmentalOpen in IMG/M
3300031167Marine microbial communities from water near the shore, Antarctic Ocean - #418EnvironmentalOpen in IMG/M
3300031589Marine microbial communities from David Island wharf, Antarctic Ocean - #35EnvironmentalOpen in IMG/M
3300031599Marine microbial communities from water near the shore, Antarctic Ocean - #71EnvironmentalOpen in IMG/M
3300031601Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031629Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80EnvironmentalOpen in IMG/M
3300031630Marine microbial communities from water near the shore, Antarctic Ocean - #38EnvironmentalOpen in IMG/M
3300031656Marine microbial communities from water near the shore, Antarctic Ocean - #67EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031660Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261EnvironmentalOpen in IMG/M
3300031687Marine microbial communities from water near the shore, Antarctic Ocean - #125EnvironmentalOpen in IMG/M
3300031688Marine microbial communities from water near the shore, Antarctic Ocean - #177EnvironmentalOpen in IMG/M
3300031689Marine microbial communities from water near the shore, Antarctic Ocean - #280EnvironmentalOpen in IMG/M
3300031706Marine microbial communities from David Island wharf, Antarctic Ocean - #36EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1006545823300000115MarineMYFDNYEKNVLLVALDHMEEHLEAIEQDGIITEDTYNLRMEAVSTARTKIQNN*
DelMOSpr2010_1013719313300000116MarineMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN*
DelMOSpr2010_1023533713300000116MarineMKLTNYEKNVILVALDHMEEHLEIIEHDGAITEDTYKLRMEAVSTARTKIQNN*
KGI_S1_ANT01_95mDRAFT_1002604263300000119MarineMKLTEYEKNITLVSLDHMEEYLFITEEAGDISEDTYDLRMKAVRTARTKIKQQ*
KGI_S1_ANT01_95mDRAFT_1007296263300000119MarineVSLDHMEEHLEEIEYNGVISEDTYNLRMNAIKTARTKINQ*
TDF_OR_ARG04_113mDRAFT_101508243300000121MarineMQLNNYEKNLLLVALDHMEEHLQSIEQDGCITVDTYQLRMETLNSARTKIENATLQIL*
JGI24003J15210_1016966533300001460MarineLLVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIKNN*
GOS2223_101927063300001935MarineVALDHMEEHLEAIEQDGVITEDTYNLRMEAVSTARTKIQNN*
Ga0055584_10225691113300004097Pelagic MarineMHFNNYEQNVLLVALDHMEEHLDAIEQYGIITEDTYKLRMEAVSTARTK
Ga0066223_110355033300004461MarineMNFDNYEKNVLLVALDHMEEHLEAIEHDGAITEDTYKLRMKAVETARTKIQNN*
Ga0066223_137763823300004461MarineMHFDNYEKNVLLVALDHMEEHLEAIEHDGVITEDTYNLRMEAVSTARTKIQNN*
Ga0075466_117200113300006029AqueousMELNNYEKNVLLVALDHMEEHLEAIEQDGVITEDTYNLRMEAVSTARTKIQNN*
Ga0075441_1014149123300006164MarineMRELEFTNYEKNILLVSLDHMEEHLEAIEHGSVISEDTYNLRMEAIKTARTKIKQ*
Ga0075441_1019369123300006164MarineMKFTNYEKNVLLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ*
Ga0075441_1023027623300006164MarineMNLTNYEKNILLVSLDHMEEHLEAIEHESVISEDTYNLRMEAIKTARTKIQPI*
Ga0075441_1027046933300006164MarineLLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKINQ*
Ga0075445_1001969693300006193MarineMNLTKYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ*
Ga0098048_102576763300006752MarineMKLSNYEQNVILVALDHMEEHLEAIELDGCITEDTYKLRMEAVNTARTKIKNN*
Ga0098048_110653623300006752MarineMEFNNYEQNVLLVALDHMEEHLQALEVMGDITEDTYNLRMGAVKTAKMKIKNY*
Ga0098055_109881343300006793MarineMQLSNYEKNVILVALDHMEEHLEAIELDGCITEDTYNLRMEAVNTARTKIQNN*
Ga0098055_128944013300006793MarineMKLSNYEQNVILVALDHMEEHLEALEVMGDITEDTYNLRMEAVNTARTKIKNK*
Ga0098045_102244633300006922MarineMQLSNYEKNVILVALDHMEEHLEAIELDGCITEDTYNLRMEAVNTARTKIKNN*
Ga0098045_114337113300006922MarineLSNYEKNVILVALDHMEEHLEAIELDGCITEDTYNLRMEAVNTARTKIQNN*
Ga0075444_1008009413300006947MarineTLVSLDHMEEYLFITEEAGDISEDTYDLRMKAVRTARTKIKQQ*
Ga0075444_1009936723300006947MarineMNLKSNNMKFTNYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ*
Ga0075444_1022545323300006947MarineMKFTNYEKNVLLVSLNHMEKHLFITEERGDITEDTCNLIMEGLKTARTKIKK*
Ga0098046_100650583300006990MarineMKLSNYEQNVILVALDHMEEHLEAIELDGCITEDTYKLRMEAVNTTRTKIKNN*
Ga0075469_1021976833300007231AqueousLDHMEEHLEAIEQDGVITEDTYNLRMEAVSTARTKIQNN*
Ga0099847_117349523300007540AqueousMKLTEYEKNITLVALDHMEEYLFITEETGDISEDTYDLRMKAVRTARTKIKQ*
Ga0102853_102156933300007543EstuarineMQLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN*
Ga0114916_110788233300008221Deep OceanMKFTNYEKNVLLVSLNHMEKHLFITKERGDITEDTYNLRMEAIKTARTKIKQ*
Ga0103732_100555133300008929Ice Edge, Mcmurdo Sound, AntarcticaMRELEFTTYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMKAIKTARTKIKQ*
Ga0103733_100235743300008930Ice Edge, Mcmurdo Sound, AntarcticaMRELEFTTYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ*
Ga0102816_110561523300008999EstuarineMQLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIKNN*
Ga0115566_1017435813300009071Pelagic MarineMNFDNYEKNVLLVALDHMEEHLEAIEQDGIITEDTYNLRMEAVSTARTKIQNN*
Ga0114915_112490113300009428Deep OceanMNDLTNYEKDLLLVALDHMEEHLESIEHDGCITEDTYNLRMGAVSTARTKIQNN*
Ga0114915_113891723300009428Deep OceanMNDLTNYEKNLLLVALDHMEEHLESIEHDGCITEDTYNLRMEAVSTARTKIENN*
Ga0114915_117447023300009428Deep OceanMKLTNYEKKVILASLDHMEGYWNDAIEDDGSITEDTYNLRIEAVNTARIKIQQVAD*
Ga0115007_1082028033300009441MarineMNFDNYEKNVLLVALDHMEEHLETIEHDGAITEDTYNLRMEAVSTARTKIQNN*
Ga0115006_1080094623300009544MarineMNFDNYEKNVLLVALDHMEEHLETIEHDGAITEDTYKLRMEAVSTARTKIQNN*
Ga0098049_107237133300010149MarineMQLSNYEKNVILVALDHMEEHLEAIELDGCITEDTYKLRMEAVNTARTKIKNN*
Ga0118733_10916273823300010430Marine SedimentMKLTNYEKNVILVALDHMEEHLEIIEHDGAITEDTYKLRMESVSTARTKIENN*
Ga0114922_1021328913300011118Deep SubsurfaceMHFDNYEKNVLLVALDHMEEHLEAIEQDGIITEDTYNLRMEAVSTARTKIQNN*
Ga0151657_103695223300011247MarineMKLTEYEENLILVSLEQMEEHQFIIYEAGDITEDTYNLRMEEVRTARTKIKQQ*
Ga0160423_10000099333300012920Surface SeawaterMKLSDYEKNVILVALDHMEEHLESIKQDGCITEGSYSLRMEAVSTARTKIKNN*
Ga0164320_1007450733300013098Marine SedimentMKLTKYEKNIILVALDHMEEYLQDIEHDGYITEDTYNLRIETLNAAITKIKNN*
Ga0181369_108773023300017708MarineMQLSNYEKNVILVALDHMEEHLEAIELDGCITEDTYNLRMEAVNTARTKIKNN
Ga0181390_117956613300017719SeawaterNINRNKTMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN
Ga0181398_101432023300017725SeawaterMQLSNYEKNVMLVAPDHMEEHLEAIEQDGCITEDTYNLRMEAVNTARTKIQNN
Ga0181418_110431313300017740SeawaterMQLSNYEKNVMLVALDHMEEHLEAIEQDGCITEDTYNLRIEAVNTARTKIQNN
Ga0181399_106318923300017742SeawaterMQLSNYEKNVMLVALDHMEEHLEAIEQDGCITEDTYNLRMEAVNTARTKIQNN
Ga0181394_119539923300017776SeawaterMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVNTARTKIQNN
Ga0181379_116438313300017783SeawaterNINRNKTMQLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIKNN
Ga0206677_1026342113300021085SeawaterMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRIEAVNTARTKIQNN
Ga0206682_1005404413300021185SeawaterMQLSNYEKNVILVALDHMEEHLETIELDGCITEDTYNLRMEAVSTARTKIQNN
Ga0213869_1007916233300021375SeawaterMELNNYEKNVLLVALDHMEEHLEAIEQDGVITEDTYNLRMEAVSTARTKIQNN
Ga0213868_1021338623300021389SeawaterMYFDNYEKNVLLVALDHMEEHLEAIEQDGIITEDTYNLRMEAVSTARTKIQNN
Ga0222717_1016681233300021957Estuarine WaterMQLSNYEKNVLLVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN
Ga0212030_102240323300022053AqueousMKLTEYEKNITLVALDHMEEYLFITEEMGDIPEDTYDLRMKAVRTARTKIKQ
Ga0224503_10010364103300022201SedimentMKLTEYEENLILVSLDHMEEHLFIIYEAGDITEDTYNLRIEAVRTARTKIKQQ
(restricted) Ga0255040_1053671523300024059SeawaterMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN
(restricted) Ga0255039_1017489513300024062SeawaterKINKTMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN
(restricted) Ga0233444_1011858533300024264SeawaterMNLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNNYDNN
(restricted) Ga0233444_1013810533300024264SeawaterMQLSNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIKNN
Ga0244777_1055378923300024343EstuarineMQLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQNN
Ga0244775_1092323813300024346EstuarineMQLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIKNN
Ga0208791_100172513300025083MarineMKLSNYEQNVILVALDHMEEHLEAIELDGCITEDTYKLRMEAVNTARTKIKNN
Ga0208791_103186133300025083MarineMEFNNYEQNVLLVALDHMEEHLQALEVMGDITEDTYNLRMGAVKTAKMKIKNY
Ga0208791_107662823300025083MarineMQLSNYEKNVILVALDHMEEHLEAIELDGCITEDTYNLRMEAVNTARTKIQNN
Ga0208013_1000122653300025103MarineMKLSNYEQNVILVALDHMEEHLEALEVMGDITEDTYNLRMGAVKTAKMKIKNY
Ga0209535_111345823300025120MarineMQLNNYEKNVLLVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIKNN
Ga0208814_108327123300025276Deep OceanMNDLTNYEKNLLLVALDHMEEHLESIEHDGCITEDTYNLRMGAVSTARTKIQNN
Ga0208660_113800213300025570AqueousLDHMEEHLEAIEQDGVITEDTYNLRMEAVSTARTKIQNN
Ga0209198_119881033300025640Pelagic MarineFDNYEKNVLLVALDHMEEHLEAIEQDGIITEDTYNLRMEAVSTARTKIQNN
Ga0208899_115837923300025759AqueousMYFDNYEKNVLLVALDHMEEHLEAIEQDGIITEDTYNLRMEAVSTA
Ga0209383_123050613300027672MarineMKFTNYEKNVLLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKINQ
Ga0209816_102166413300027704MarineITLVSLDHMEEYLFITEEAGDISEDTYDLRMKAVRTARTKIKQL
Ga0209816_104088543300027704MarineMKFTNYEKNVLLVSLNHMEKHLFITEERGDITEDTCNLIMEGLKTARTKIKK
Ga0209816_105396753300027704MarineMKLTEYEKNITLVSLDHMEEYLFITEEAGDISEDTYDLRMKAVRTARTKIKQQ
Ga0209815_102444943300027714MarineMKFTNYEKNVLLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ
Ga0209815_109174823300027714MarineMNLTKYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKINQ
Ga0209279_1021280443300027771MarineILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIQQ
Ga0209302_1023129223300027810MarineMNFDNYEKNVLLVALDHMEEHLETIEHDGAITEDTYKLRMEAVSTARTKIQNN
Ga0209092_1002754423300027833MarineMKLTEYEKNITLVALDHMEEYLFITEETGDISEDTYDLRMKGVRTARTKIKQQ
Ga0209092_1034165313300027833MarineMNFDNYEKNVLLVALDHMEEHLEAIEHDGAITEDTYKLRMEAVSTARTKIENN
(restricted) Ga0233414_1049031633300028045SeawaterMNLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRMEAVSTARTKIQ
Ga0308024_105665823300031140MarineMQFTNYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTARTKITQ
Ga0308025_111808223300031143MarineMQFTNYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTARTKIKQ
Ga0308023_100528853300031167MarineMKFTNHEKNVLLVSLDHMEEHLFIIEEGGDITEDTYNSHMKAIKTARTKIKQ
Ga0308023_108229613300031167MarineMNLTNYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTARTKIKQ
Ga0307996_100004123300031589MarineMNLKSNNMQFTNYEKNVLLVSLDHMEEHLFIMIEGGDITEDTYNLRTEAIKTARNKIKQ
Ga0307996_100886833300031589MarineMKLTNYEKKVILASLDHMEGYWNDAIEDEVLKDYYKERLEAVNTARIKITK
Ga0307996_105432223300031589MarineMKLTNYEKKVILASLDHMEGYWNDAIEDDGSITEDTYNLRIEAVNTARIKIQNKL
Ga0307996_107095423300031589MarineMKFTTYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ
Ga0308007_1002744363300031599MarineMKFTNYEKNVLLVSLDHMEEHLFIIEECGDITEDTYNLRMEAIKTARTKIKQ
Ga0307992_107571143300031601MarineMNLTNYEKNVLLVSLDHMEEHLEAIEHESVISEDTYNLRMEAIKTARTKIQQ
Ga0307993_101292443300031602MarineMKFTNYEKNVLLVSLDHMEEHLETIEHESVISKDTYNLRMEAIKTARTKIKQ
Ga0307993_102895123300031602MarineMNLTNYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTARTKIQQ
Ga0307993_117428223300031602MarineMKLTNYEKKVILASLDHMEGYWNDAIEDDGSITEDTYNLRIEAVNTARIKITNYEDN
Ga0307985_1016470343300031629MarineMKFTNYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTA
Ga0307985_1036827133300031629MarineKNVLLVSLDHMEEHLEAIEHESVISEDTYNLRMEAIKTARTKIQQ
Ga0307985_1038845533300031629MarineYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTARTKIKQ
Ga0308004_1007374713300031630MarineMNLKSNNMKFTNYEKNVLLVSLDHMEEHLFIIEECGDITEDTYNLRMEAIKTARTKIKQ
Ga0308005_1018956213300031656MarineYTNLISNNMKFTNHEKNVLLVSLDHMEEHLFIIEEGGDITEDTYNSHMKAIKTARTKIKQ
Ga0307984_108410213300031658MarineMKLTNYEKKVILASLDHMEGYWNDAIEDDGSITEDTYNLRIEAVNTARIKIQQVAD
Ga0307994_123207713300031660MarineEKNVLLVSLDHMEEHLEAIEHESVISEDTYNLRMEAIKTARTKIQQ
Ga0308008_102356123300031687MarineMKLTNYEKKVILASLDHMEGYWNDAIEDDGTITEDTYNLRIEAVNTARIKIQQVAD
Ga0308011_1012485513300031688MarineMKFTNYEKNVLLVSLDHMEEHLETIEHESVISEDTYNLRMEAIKTARTK
Ga0308011_1023287823300031688MarineKLTMKLTNYEKKVILASLDHMEGYWNDAIEDDGSITEDTYNLRIEAVNTARIKIQQVAD
Ga0308017_111370023300031689MarineIYTNLISNNMKFTNYEKNVLLVSLDHMEEHLFIIEECGDITEDTYNLRMEAIKTARTKIK
Ga0307997_1020220423300031706MarineMRELEFTTYEKNILLVSLDHMEEHLFIIEEGGDITEDTYNLRMEAIKTARTKIKQ
Ga0315320_10044693123300031851SeawaterMQLNNYEKNVILVALDHMEEHLEAIEQDGCITEDTYNLRIEAVNTARTKIQNN


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