Scaffold Ga0207862_1016828

Overview

Basic Information

• Taxon OID: 3300027703
• Scaffold ID: Ga0207862_1016828
• Source Dataset Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2168
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047625	Metagenome / Metatranscriptome	149	Y
F092174	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207862_10168282	F092174	AGGAGG	VAITRFRVKEAFSATLVPTRRRETFLPGELIVLVDGAESPSESRFIRVNGIRRSQGAECRYTMGSAELKEKTEIAGTTIVAMRPRAHHAGRAEDSPAKVDTGS
Ga0207862_10168283	F047625	AGCAG	MLQKEYGSFYRAVSDILFRHNPMELDGKRNTGDYNPEVDVLLSRIREAEDLNTLRQLLFEIFLTDFGEENCGNRERYEVAASEIWKAYERHRAT