Scaffold Ga0209446_1002535

Overview

Basic Information

• Taxon OID: 3300027698
• Scaffold ID: Ga0209446_1002535
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4448
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019286	Metagenome / Metatranscriptome	230	Y
F054489	Metagenome	139	Y
F078173	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209446_10025352	F054489	GAG	MLSPERSARCAVRDTRAPGADRFRWTVAVLGQLDPVAEGRAENRAEARSLAEAAVAAYFAEPSESARDG
Ga0209446_10025353	F078173	GAG	MADGPLRRLFWRVADHLGYLLTPVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIE
Ga0209446_10025356	F019286	AGGA	MTPDQLTGAARNLAYGLGIPVYIRDGRIYQHGPGLKFLPPGGARLTEAGAPSLEEEEVDGEE