Metagenome Family F078173

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078173
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	61 residues
Representative Sequence	MADGTLQRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRYRERIKRTFPEIE
Number of Associated Samples	82
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	57.89 %
% of genes near scaffold ends (potentially truncated)	37.93 %
% of genes from short scaffolds (< 2000 bps)	80.17 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (52.586 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.379 % of family members)
Environment Ontology (ENVO)	Unclassified (49.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13091	PLDc_2	12.07
PF13650	Asp_protease_2	2.59
PF07589	PEP-CTERM	2.59
PF13975	gag-asp_proteas	1.72
PF12464	Mac	1.72
PF11994	DUF3489	1.72
PF01230	HIT	0.86
PF03006	HlyIII	0.86
PF12974	Phosphonate-bd	0.86
PF02810	SEC-C	0.86
PF02735	Ku	0.86
PF02796	HTH_7	0.86
PF04052	TolB_N	0.86
PF00239	Resolvase	0.86
PF00313	CSD	0.86
PF00005	ABC_tran	0.86
PF00211	Guanylate_cyc	0.86
PF02586	SRAP	0.86
PF01609	DDE_Tnp_1	0.86
PF00486	Trans_reg_C	0.86
PF00805	Pentapeptide	0.86
PF02049	FliE	0.86
PF07369	DUF1488	0.86
PF14833	NAD_binding_11	0.86
PF04392	ABC_sub_bind	0.86
PF00106	adh_short	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1677	Flagellar hook-basal body complex protein FliE	Cell motility [N]	1.72
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.86
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.86
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.86
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.86
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.86
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.86
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.86
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.86
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.86
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.86
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.86
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.86
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
All Organisms	root	All Organisms	47.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
cellular organisms	root	All Organisms → cellular organisms	47.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.31 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	2.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.59 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.72 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
Rhodoferax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.59 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	1.72 %
Rhodoferax ferrireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax ferrireducens	0.86 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.59 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1.72 %
Rhodoferax ferrireducens T118	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax ferrireducens → Rhodoferax ferrireducens T118	0.86 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10073563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300003219\|JGI26341J46601_10123191	Not Available	740	Open in IMG/M
3300004080\|Ga0062385_10305803	Not Available	913	Open in IMG/M
3300004080\|Ga0062385_11283976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300004091\|Ga0062387_100367089	Not Available	957	Open in IMG/M
3300004091\|Ga0062387_101298176	Not Available	575	Open in IMG/M
3300004092\|Ga0062389_100119762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2392	Open in IMG/M
3300004152\|Ga0062386_100457516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1033	Open in IMG/M
3300004152\|Ga0062386_101192289	Not Available	633	Open in IMG/M
3300004635\|Ga0062388_102288228	Not Available	564	Open in IMG/M
3300005471\|Ga0070698_102159600	Not Available	510	Open in IMG/M
3300009012\|Ga0066710_103130940	Not Available	638	Open in IMG/M
3300009088\|Ga0099830_11052037	Not Available	674	Open in IMG/M
3300010048\|Ga0126373_12833854	Not Available	541	Open in IMG/M
3300010339\|Ga0074046_10081572	Not Available	2101	Open in IMG/M
3300010341\|Ga0074045_10057017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2803	Open in IMG/M
3300010341\|Ga0074045_10223851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1252	Open in IMG/M
3300010343\|Ga0074044_10080510	Not Available	2201	Open in IMG/M
3300010343\|Ga0074044_10086372	Not Available	2117	Open in IMG/M
3300010343\|Ga0074044_10528343	Not Available	770	Open in IMG/M
3300010343\|Ga0074044_11015103	Not Available	544	Open in IMG/M
3300010366\|Ga0126379_11527980	Not Available	773	Open in IMG/M
3300010376\|Ga0126381_100489512	Not Available	1732	Open in IMG/M
3300011270\|Ga0137391_10854318	Not Available	747	Open in IMG/M
3300012203\|Ga0137399_10622426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300012203\|Ga0137399_11155557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300012205\|Ga0137362_10197610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1730	Open in IMG/M
3300012361\|Ga0137360_10133630	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300012362\|Ga0137361_11780368	Not Available	534	Open in IMG/M
3300012362\|Ga0137361_11881667	Not Available	515	Open in IMG/M
3300012363\|Ga0137390_10648797	Not Available	1020	Open in IMG/M
3300012971\|Ga0126369_10891142	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300016270\|Ga0182036_11048936	Not Available	673	Open in IMG/M
3300016319\|Ga0182033_10058674	All Organisms → cellular organisms → Bacteria	2650	Open in IMG/M
3300016319\|Ga0182033_11030217	Not Available	733	Open in IMG/M
3300016341\|Ga0182035_10190016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1615	Open in IMG/M
3300016422\|Ga0182039_11308600	Not Available	657	Open in IMG/M
3300016422\|Ga0182039_12255180	Not Available	503	Open in IMG/M
3300016422\|Ga0182039_12273761	Not Available	501	Open in IMG/M
3300017822\|Ga0187802_10133166	Not Available	945	Open in IMG/M
3300018085\|Ga0187772_10031953	Not Available	3134	Open in IMG/M
3300018086\|Ga0187769_10026313	All Organisms → cellular organisms → Bacteria	3913	Open in IMG/M
3300020579\|Ga0210407_10181897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1629	Open in IMG/M
3300020580\|Ga0210403_10004509	All Organisms → cellular organisms → Bacteria	11987	Open in IMG/M
3300020580\|Ga0210403_10160126	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300021088\|Ga0210404_10348688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300021170\|Ga0210400_10602483	Not Available	906	Open in IMG/M
3300021405\|Ga0210387_10163441	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300027698\|Ga0209446_1002535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	4448	Open in IMG/M
3300027698\|Ga0209446_1003585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3793	Open in IMG/M
3300027698\|Ga0209446_1007776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2625	Open in IMG/M
3300027729\|Ga0209248_10047016	Not Available	1328	Open in IMG/M
3300027783\|Ga0209448_10037954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1617	Open in IMG/M
3300027783\|Ga0209448_10068291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1195	Open in IMG/M
3300027783\|Ga0209448_10243782	Not Available	593	Open in IMG/M
3300027783\|Ga0209448_10265433	Not Available	565	Open in IMG/M
3300027812\|Ga0209656_10088682	Not Available	1646	Open in IMG/M
3300027824\|Ga0209040_10001838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16793	Open in IMG/M
3300027824\|Ga0209040_10322720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax ferrireducens → Rhodoferax ferrireducens T118	743	Open in IMG/M
3300028047\|Ga0209526_10667081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300031231\|Ga0170824_128015481	Not Available	615	Open in IMG/M
3300031446\|Ga0170820_13454691	Not Available	642	Open in IMG/M
3300031474\|Ga0170818_104212160	Not Available	533	Open in IMG/M
3300031545\|Ga0318541_10085616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1673	Open in IMG/M
3300031545\|Ga0318541_10406875	Not Available	761	Open in IMG/M
3300031546\|Ga0318538_10774855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300031561\|Ga0318528_10143865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1268	Open in IMG/M
3300031564\|Ga0318573_10073038	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300031573\|Ga0310915_10012408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4987	Open in IMG/M
3300031573\|Ga0310915_10018576	All Organisms → cellular organisms → Bacteria	4190	Open in IMG/M
3300031573\|Ga0310915_11283370	Not Available	505	Open in IMG/M
3300031640\|Ga0318555_10162827	All Organisms → cellular organisms → Bacteria → Proteobacteria	1197	Open in IMG/M
3300031679\|Ga0318561_10716604	Not Available	550	Open in IMG/M
3300031681\|Ga0318572_10669275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	618	Open in IMG/M
3300031708\|Ga0310686_105167827	All Organisms → cellular organisms → Bacteria → Proteobacteria	1865	Open in IMG/M
3300031719\|Ga0306917_10085741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2224	Open in IMG/M
3300031719\|Ga0306917_10783907	Not Available	748	Open in IMG/M
3300031736\|Ga0318501_10490874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	669	Open in IMG/M
3300031747\|Ga0318502_10619342	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031764\|Ga0318535_10041081	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300031770\|Ga0318521_10206276	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300031771\|Ga0318546_10055670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2478	Open in IMG/M
3300031778\|Ga0318498_10402966	Not Available	608	Open in IMG/M
3300031780\|Ga0318508_1221860	Not Available	542	Open in IMG/M
3300031793\|Ga0318548_10121175	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031832\|Ga0318499_10075166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300031845\|Ga0318511_10509783	Not Available	557	Open in IMG/M
3300031860\|Ga0318495_10402147	Not Available	603	Open in IMG/M
3300031890\|Ga0306925_10144016	Not Available	2563	Open in IMG/M
3300031890\|Ga0306925_11593040	Not Available	635	Open in IMG/M
3300031893\|Ga0318536_10359474	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300031894\|Ga0318522_10160150	Not Available	849	Open in IMG/M
3300031894\|Ga0318522_10255154	Not Available	665	Open in IMG/M
3300031896\|Ga0318551_10952265	Not Available	502	Open in IMG/M
3300031897\|Ga0318520_10872462	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300031912\|Ga0306921_10476273	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300031912\|Ga0306921_10612962	Not Available	1258	Open in IMG/M
3300031912\|Ga0306921_11623978	Not Available	702	Open in IMG/M
3300031946\|Ga0310910_10043090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3145	Open in IMG/M
3300031946\|Ga0310910_10298153	Not Available	1268	Open in IMG/M
3300031946\|Ga0310910_10978077	Not Available	662	Open in IMG/M
3300031962\|Ga0307479_11105950	Not Available	759	Open in IMG/M
3300032035\|Ga0310911_10253118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1009	Open in IMG/M
3300032035\|Ga0310911_10405910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	788	Open in IMG/M
3300032035\|Ga0310911_10560247	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300032039\|Ga0318559_10168486	Not Available	1000	Open in IMG/M
3300032060\|Ga0318505_10142048	Not Available	1109	Open in IMG/M
3300032060\|Ga0318505_10213723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	904	Open in IMG/M
3300032063\|Ga0318504_10321080	Not Available	734	Open in IMG/M
3300032064\|Ga0318510_10493127	Not Available	530	Open in IMG/M
3300032065\|Ga0318513_10183295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1006	Open in IMG/M
3300032076\|Ga0306924_10140565	All Organisms → cellular organisms → Bacteria → Proteobacteria	2760	Open in IMG/M
3300032076\|Ga0306924_10219623	Not Available	2182	Open in IMG/M
3300033290\|Ga0318519_10207399	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.03%
Aquatic	Environmental → Aquatic	18.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Freshwater	Environmental → Aquatic → Freshwater	18.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.76%
Loam	Environmental → Terrestrial → Soil → Loam	1.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.07%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.38%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	18.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.76%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	6.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100735632	3300003218	Bog Forest Soil	MADGPLRRLFWRVTDQLDYLVTLALLRILDAVCGPEPETSADRQRQRDRERTRTAFPEIEP*
JGI26341J46601_101231911	3300003219	Bog Forest Soil	MADGPLRRLFWRVADHLGYLLTPVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIER*
Ga0062385_103058032	3300004080	Bog Forest Soil	MADGTLQRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRYRERIKRTFPEIEA*
Ga0062385_112839762	3300004080	Bog Forest Soil	MADGRLRQLFWRVADKLDYLVTLVRLRMLDALAGPLPETSANRQREQDRERLRKAFPKI
Ga0062387_1003670892	3300004091	Bog Forest Soil	MAEGPTARLSWRVADQLDYLVTLARLRILDALAGPLPETLADRQRQRDRERIERAFPEIEPRGARHRGSPGSD*
Ga0062387_1012981761	3300004091	Bog Forest Soil	MTDGPKACLFWRGLDRADYWLTLARLRILDALAGPLPETPADRRRRQDRERIKRAFPEIEP*
Ga0062389_1001197625	3300004092	Bog Forest Soil	MTDTRPGRLFWRVADQLDYLVTLARVRILDALAGPEPETSADEQRQRDREKIERAFPEIEP*
Ga0062386_1004575161	3300004152	Bog Forest Soil	GVRAMTKGRLRRLFWRVADALDYHVTLLRLRILDALAGPLPEIPADQQRARDRERIERVFPKIEP*
Ga0062386_1011922891	3300004152	Bog Forest Soil	GDIMAMADGRLRRLFWRVADVLDYLWTLTRLRILGAIVGPEPEAPADQQRAQDRERIERAFPEIEP*
Ga0062388_1022882281	3300004635	Bog Forest Soil	RLFSRALDRVDYWLTLAWLRTLDALAGPEPETPADQQRQRDRKRMKRAFPEIEP*
Ga0070698_1021596001	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VAMAARRLARLFWRVVDALDYLATLTRLRILDMLAGPEPATPADQQRERDRIERAFPEIAPPKSGRRDRG*
Ga0066710_1031309401	3300009012	Grasslands Soil	MTEGPLRRLFWRVVDPLHYLLMLAWLRILDTLAGPDPETADQERQRERERIERAFPKIEP
Ga0099830_110520372	3300009088	Vadose Zone Soil	MSDGLLARFSWRVVDALDYLVTLAWLRILDRLGGPEPETPADEQWKRDREQIERAFPKIEP*
Ga0126373_128338541	3300010048	Tropical Forest Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER*
Ga0074046_100815722	3300010339	Bog Forest Soil	MADGPLRRLFWRVVDHLDYLLKLARLRILDVLAGPEPETPAGQWRKWDREQIERTFPEIEP*
Ga0074045_100570174	3300010341	Bog Forest Soil	MADGPLRRLFWLVADHLGYLLTLVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIER*
Ga0074045_102238512	3300010341	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLGRLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIEP*
Ga0074044_100805103	3300010343	Bog Forest Soil	MGRGPLRRFFWRVADALDYLLTLARLRVLDPPAGPEPETPADQQWRWDRERIESAFPEIGG*
Ga0074044_100863721	3300010343	Bog Forest Soil	GRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRDHEKIERAFPEIEP*
Ga0074044_105283431	3300010343	Bog Forest Soil	MAEGPLRRLSWRVADALDYLWTLKRLRILDALAGPEPETPADLKRKRDRERLERGFPGIEP*
Ga0074044_110151031	3300010343	Bog Forest Soil	MIDRPLYRPFWRVVDHLDYLVTLSKLRILDAVCGPLPETSADQQQARDRERLKKAFPKIRP*
Ga0126379_115279802	3300010366	Tropical Forest Soil	MTEGWLRQLFWRVADHLDYLVTLVRLRILDALAGPLPETPADRQREQDRERIKRAFPEVEP*
Ga0126381_1004895122	3300010376	Tropical Forest Soil	MGRGPLRRFFWRVADDLDYLRTLATLRILDALPGPLPETPADQQRERDWGRLEGRSPRL*
Ga0137391_108543182	3300011270	Vadose Zone Soil	MADGALRRLFWRLVDGLDYLLTLAWLRILDALASPEPETPADQQRERDRERIERAFPKIEK*
Ga0137399_106224261	3300012203	Vadose Zone Soil	MAMIDGPLRRIFWRMADALAYVLTLAWLRILDALAGPEPESPADEQREYDREQIAKAFPSASGRGG*
Ga0137399_111555572	3300012203	Vadose Zone Soil	LTRDYGASSGAADGLGYWLTLARLRILDAVAGPLPETPADQQRKRDRERMERAFPEIEP*
Ga0137362_101976103	3300012205	Vadose Zone Soil	MPGGVASGMAMIDGPLRRLFWRVADALGYLLTLVWLSILDALAGPEPETAADQERQREREQIERAFPKIEQ*
Ga0137360_101336302	3300012361	Vadose Zone Soil	MPGGVASGMGMIDGPLRRLFWRVADALGYLLTLVSLRILDALAGPEPETAADQERQREREQIERAFPKIEQ*
Ga0137361_117803682	3300012362	Vadose Zone Soil	VAMPDGRLRRLFWRVADALDYLVTVARLRILDMLAGPEPETPADQQRERDRDRERIERGVPRDRA*
Ga0137361_118816671	3300012362	Vadose Zone Soil	MLDTGLRRFFWRIADGLGYWLTLARLRILDAVAGPLPETPADQQRKRDRERMERAFPEIEP*
Ga0137390_106487971	3300012363	Vadose Zone Soil	MADGPLRRLFWRMVDALDYLLTLARMRILDKLAGPEPETPADEQREGDRKRIERASPENRAVTSWAPK*
Ga0126369_108911423	3300012971	Tropical Forest Soil	LRRVFWRDADQLDYLVTLARLRILDALTGALPETAADRQWQRDLERIKRAFPEIER*
Ga0182036_110489362	3300016270	Soil	MADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0182033_100586741	3300016319	Soil	TGPCRQAVGVCAVADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0182033_110302171	3300016319	Soil	MADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFP
Ga0182035_101900161	3300016341	Soil	VRAVADAPFRCLFWRVADAFDYLLMLVRLRALDALAGPEPETPADRQRERDRERIERAFPRLDSEEPGAV
Ga0182039_113086002	3300016422	Soil	MMADGWLRQLFWRMVDHLDYVVTLVRLRILDALAGPFPETPADRQREQDRERIKRAFPEVEP
Ga0182039_122551801	3300016422	Soil	LFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0182039_122737611	3300016422	Soil	LRQLFWRVADKLDYLVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0187802_101331661	3300017822	Freshwater Sediment	MADARLRRLFWHVVDALDYLPTLARLRVLDALAGPEPETAADKQRKRDRERMERVFPKIE
Ga0187772_100319534	3300018085	Tropical Peatland	MADARLRRLFWHVVDALDYFLTLARLRVLDALAGPEPETAADQQRKRDRERMERVLPKIE
Ga0187769_100263133	3300018086	Tropical Peatland	MADARLRRLFWHVVDALDYFLTLARLRVLDALAGPEPETAADQQRKRDRERMERVFPKIE
Ga0210407_101818971	3300020579	Soil	MAMLETGLRRLFGRVVDGLDYVQTLVRLRILDAVAGPEPETSADQRREAGRERMQRAFPEIEP
Ga0210403_100045099	3300020580	Soil	VATGRLRRLFWRVADVLDYLWTLATLRILDALAGPLPETPADEQRARDREQIKRAFPTIE
Ga0210403_101601261	3300020580	Soil	VCAVVDGRLRQLFWRVADDLDYLWTLANLRMLDALAGPLPETPADRQRQRDRETLKRAFPEIEP
Ga0210403_107694311	3300020580	Soil	MAMLDTALRRLFWSIVDHLDYVLTLVRLRILDAVAGPEPETPADQKREKGR
Ga0210404_103486882	3300021088	Soil	MAILDAGIRRFFWRVADGLDYVLTLVRLRILDAVAGPEPETSADQRREAGRERMQRAFPEIEP
Ga0210400_106024831	3300021170	Soil	MFDTGLRRVLWRVVDGLDYVQTLVRLRILDAVAGPEPETSADQRREAGRERMQRAFPEIE
Ga0210387_101634411	3300021405	Soil	MARGRLARFFWRVVGALDYFLTLARLRILDALARPEPETRADQQRARDRELIERAFPAIEPKSGGT
Ga0209446_10025353	3300027698	Bog Forest Soil	MADGPLRRLFWRVADHLGYLLTPVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIE
Ga0209446_10035858	3300027698	Bog Forest Soil	MADGPLRRLFWRVTDQLDYLVTLALLRILDAVCGPEPETSADRQRQRDRERTRTAFPEIE
Ga0209446_10077762	3300027698	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLARLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIE
Ga0209248_100470162	3300027729	Bog Forest Soil	MADGTLQRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRYRERIKRTFPEIE
Ga0209448_100379541	3300027783	Bog Forest Soil	MAEGPTARLSWRVADQLDYLVTLARLRILDALAGPLPETLADRQRQRDRERIERAFPEIEPRGARHRGSPGSD
Ga0209448_100682912	3300027783	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLARLRILDVLAGPEPETPAGQWRKWDREQIERAFPEIE
Ga0209448_102437822	3300027783	Bog Forest Soil	MTDGPKACLFWRGLDRADYWLTLARLRILDALAGPLPETPADRRRRQDRERIKRAFPEIE
Ga0209448_102654331	3300027783	Bog Forest Soil	MADGPFRCLFWRVADQLDYLVTLASLRILDAVCGPEPETPADQQRQWDRERIKRTFPEIE
Ga0209656_100886822	3300027812	Bog Forest Soil	MADGPLRRLFWRVVDHLDYLLKLARLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIE
Ga0209040_1000183814	3300027824	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLGRLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIE
Ga0209040_103227202	3300027824	Bog Forest Soil	MTKGRLRRLFWRVADALDYHVTLLRLRILDALAGPLPEIPADQQRARDRERIERVFPKIE
Ga0209526_106670812	3300028047	Forest Soil	MAMLDTALRRLFWRVVDHLDYVLTLVRLRVLDAVAGPEPVTPADQKREKDREQIEREFPKIATPED
Ga0170824_1280154812	3300031231	Forest Soil	VTTGRLRRLFWRVADDLHYFWTLATLRILDALAGPLPETPADQRRARDRERIERAFPTIE
Ga0170820_134546911	3300031446	Forest Soil	VGAASKGLLRRSFWRVADRLDYLWTLATLCILDALAGPLPETEADRQRARDQERVEKAFHRNR
Ga0170818_1042121601	3300031474	Forest Soil	VATGRLRHLFWRVADEFHYLWTLATLRILDALARPLPETPADEERQRDRERIKKAFPEIG
Ga0318541_100856163	3300031545	Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0318541_104068751	3300031545	Soil	VGVRSMADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0318538_107748552	3300031546	Soil	VATGLPRRLFWRVADDLDYLWTLVRLRILDALAGLLPGTTADQQRTQDRERIKRAFPQIE
Ga0318528_101438651	3300031561	Soil	VCAVADGRLRQLFWRVADQLDYVVTLARLRILDALAGPLAETPADRQRRQDRERLRKAFPEIEP
Ga0318573_100730383	3300031564	Soil	MADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFPEIE
Ga0310915_100124082	3300031573	Soil	VADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIE
Ga0310915_100185766	3300031573	Soil	VADGRLRQLFWRVADQLDYVVTLARLRILDALAGPLAETPADRQRRQDRERLRKAFPEIE
Ga0310915_112833702	3300031573	Soil	DALDCFLTLARLRILDALAGPEPETPADQQRKRARERIERCV
Ga0318555_101628271	3300031640	Soil	TVGVRAMADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFPEIER
Ga0318561_107166041	3300031679	Soil	VRAVADALFRCLFWRVADAFDYLLMLVRLRALDALAGPEPETPADRQRERDRERIERAFPRLDSEEPGAV
Ga0318572_106692752	3300031681	Soil	LNVCQAITERLRRLFWRVTDALDYLVTRVRLRILGALAGPEPETLADQQRKQDRERVKRAFSEIEP
Ga0310686_1051678274	3300031708	Soil	VATGRLRRLSWRVADDLDYLWTLATLRILDWLAGPLPETPADQQRDRDRERLRRAFPEIE
Ga0306917_100857413	3300031719	Soil	MADGRLRQLFWRVLDRAECWLTLARLRILDALAGPLPETPADQRRARDREKIKRAFPEIE
Ga0306917_107839072	3300031719	Soil	GLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPKTPADQQLQRDRERIERMRSSVIGC
Ga0318501_104908742	3300031736	Soil	FRCLFWRVADDLDYLWTLATLRILDALAGPLPETEADQQRARDRERIERAFPEIGG
Ga0318502_106193423	3300031747	Soil	MGRGPLRRFFWRMVDALDYFLTLASLRILDALAGPLPETEAERRREQDRERLERAFPEIERWGVTRR
Ga0318535_100410812	3300031764	Soil	AVGVCAVADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318521_102062761	3300031770	Soil	MGRGPLRRFFWRMVDALDYFLTLASLRILDALAGPLPETEAERRREQDRERLERAFPEIERWGVTR
Ga0318546_100556701	3300031771	Soil	MTKGQLRRLFWRVADGLDYLVTLARLRILDAIVGHEPETPADQQRARDRER
Ga0318498_104029661	3300031778	Soil	VRAMADGPLRRLFWRVADDLDYLVTLARRRIMDALAGPEPETPADQQRARDRERIEKAFP
Ga0318508_12218602	3300031780	Soil	VRAMADGPLRRLFWRVADDLDYLVTLARRRIMDALAGPEPETPADQQRARDRERIEKAFPETEREQPN
Ga0318548_101211751	3300031793	Soil	VCAVADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318499_100751663	3300031832	Soil	IEGGCGRRLFWRVADHLDYLLTLARLRTLDALAGPLPETPADQQRQWDRERIARAFPEIE
Ga0318511_105097831	3300031845	Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRKRARERIERCV
Ga0318495_104021471	3300031860	Soil	MADGPQRRLFWRVADLDYLVTLAMRRILDALAGPEPETPADQQRARDRERIEKAFPETSVSSRTP
Ga0306925_101440162	3300031890	Soil	MMADGWLRQLFWRMVDHLDYVVTLVRLRILDALAGPLPETPADRQREQDRERLKRAFPEVEP
Ga0306925_115930402	3300031890	Soil	MADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPKTPADQQLQRDRERIERMRSSVIGC
Ga0318536_103594742	3300031893	Soil	MADRPLRRLFWRVADDLDYLWTLATRRILDAAVGPEPETPADQQRALDRERIKRAFPEIE
Ga0318522_101601503	3300031894	Soil	VGVCAVADGRLRQLFWRVADKLDYLVTLVRLRILDALAGPLQERSADQRRARERIESLR
Ga0318522_102551542	3300031894	Soil	IVATGRLRRLFWRVADDLDYLVTLTRLRVLDAIVGPLPETPADQQCEQDRERLRKAFPEIEP
Ga0318551_109522652	3300031896	Soil	MAEGPRSRLFWRVADHLDYLVTVAGLRILDALAGPEPEADGDRQRYRDRERLRAAFPKINEEPGGIV
Ga0318520_108724622	3300031897	Soil	LPRRLFWRVADDLDYLWTLVRLRILDALAGLLPGTTADQQRTQDRERIKRAFPQIEP
Ga0306921_104762732	3300031912	Soil	MARRPLRRLFWRVADQLDYLVTLAWLRILDALAGSLPETPADWRRQWDRERIERAFPEIE
Ga0306921_106129622	3300031912	Soil	RSMADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0306921_116239782	3300031912	Soil	MADRPLRFLFWRVADALDYLLTLVRLRALDALAGPEPETPADRQRERDRERIERAFPRLDSEEPGAV
Ga0310910_100430906	3300031946	Soil	RLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0310910_102981534	3300031946	Soil	RQLFWRVLDRAECWLTLARLRILDALAGPLPETPADQRRARDREKIKRAFPEIEL
Ga0310910_109780771	3300031946	Soil	LPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0307479_111059501	3300031962	Hardwood Forest Soil	TAMFDTGLRRVLWRVVDHLDYLLTLVRLRILDAVAGPEPETSTDQRREAGRERMQRAFPEIEP
Ga0310911_102531182	3300032035	Soil	VGVRAMPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIE
Ga0310911_104059101	3300032035	Soil	RRLFWRVADALDYLVTLLRLRILDALAGPLPETPADQQRARDRERLRRAFPEIEP
Ga0310911_105602472	3300032035	Soil	QTVGVRAMADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFPEIER
Ga0318559_101684862	3300032039	Soil	TDPRRGRLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318533_101169404	3300032059	Soil	VRAVADALFRCLFWRVADAFDYLLMLVRLRALDALAGPEPETPADRQGSGDRERIERAF
Ga0318505_101420482	3300032060	Soil	RLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318505_102137231	3300032060	Soil	PRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0318504_103210802	3300032063	Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPE
Ga0318510_104931272	3300032064	Soil	FWRVADALDCFLTLARLRILDALAGPEPETPADQQRKRARERIERCD
Ga0318513_101832952	3300032065	Soil	RVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0306924_101405652	3300032076	Soil	LFGRVTDQLDRLVTLGRLRVLDALAGPFPETPADRQREQDRERIKRAFPEVEP
Ga0306924_102196234	3300032076	Soil	VRAMADGPLRRLFWRVADDLDYLVTLARRRIMDALAGPEPETPADQQRARDRERIEKAFPETEREQ
Ga0318519_102073992	3300033290	Soil	VGVCAVADGRLRQLFWRVADQLDYVVTLARLRILDALAGPLAETPADRQRRQDRERLRKAFPEIEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078173

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences