Scaffold Ga0209033_1020369

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1020369
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2706
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F021065	Metagenome / Metatranscriptome	220	Y
F047671	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_10203691	F009503	AGGAG	MDTVQFECRKCKKVTKQVIHKVTDNLPDGVEVIQCTKCEVMGVAQIGTSNANL
Ga0209033_10203692	F021065	AGGA	MTLTRAEEFTCHDAAIHLAKANTDYWQTRPGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVEFDPFEQKGKTKADVGSHFEVRWTKYLAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHSKQPNWWVTQINLQPIENLRRSNYGHSSV
Ga0209033_10203694	F005697	GGA	MGFLDNYEASRERLERWNRTYPLGRIETRIVEFSAEKGYVLVEAKAYRNDTDLQPAGIDYAYGYQGAYQQNMKRWFCEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANADKQYDYWTTKFGDVPSYKTEDEVAAAGMPTLASGIAEISKQLGGELVKESPQCKHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCEPLWYVFTSDGTWKPQV
Ga0209033_10203697	F047671	N/A	ARSFMAAALALYMAGVTDPKTLAMGGVAAIAPVVLRWLNPQDKSFGLTGK