Scaffold Ga0209033_1015960

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1015960
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3171
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F039131	Metagenome / Metatranscriptome	164	Y
F061853	Metagenome / Metatranscriptome	131	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_10159603	F039131	N/A	MAQDEIYELEGYFQRKYTQSIIDQINNFEFPEEWTPKQVVDYITYKIDRK
Ga0209033_10159605	F105175	AGGAG	MADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGAGLGNGGK
Ga0209033_10159606	F001280	GGTGG	VCVECGCEAFGSETGINNIPGGMLNVARDGEAGLTLNMTATPEQRERFINE
Ga0209033_10159609	F061853	AGGAG	MNKKTITLLSLGLALAAIAYVTYNSLSQLKDIDYDLFEEDIDDIDE