NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209704_1001654

Scaffold Ga0209704_1001654


Overview

Basic Information
Taxon OID3300027693 Open in IMG/M
Scaffold IDGa0209704_1001654 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4602
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008073Metagenome339Y
F024318Metagenome206Y
F030017Metagenome186Y
F034898Metagenome / Metatranscriptome173Y
F104771Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209704_10016541F104771N/ALFNDSEMYLDQEVLFYYEGEEYCWTGHYEVKQCGEESDWDYCGDSEVEVEIETTKAITKFNEETNGWDEVTPTNSLIYEVVLNIERNI
Ga0209704_100165412F008073N/AMNEIILTHLRKMEFVCGLKQFKEYKKEEASELLGCLSKLFGSYGWMTEARVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKESEPSNEEIAYWIEVGKEIFRKNYQYAKETGYCLDISEWGMNWFNKFQEKGILKPWEFNVEEMENDVRKELRLTVRYVDETSVGAKTKNKIWKLFILQAIRENKDLDKLI
Ga0209704_10016544F024318N/AMSKYTYLGKEIQRPADLAPRGVKSTYQTEKLPFNETFERLWKLKR
Ga0209704_10016545F030017N/AMETQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKMKLHEIHPRKLMDENIFKILSDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDIAQSKNMIEKKI
Ga0209704_10016549F034898N/AMTREEIITELNHRSTQKYLVYLALQEIMLDYYEDVTMLKAFDGDLKTKHKNMINALKRKSTQAFRFLENYDGGEATIKQFHEFVTLFERLHNSIDQGGYLFHQCLNAVEQILNDYEKEKS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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