Scaffold Ga0209551

Basic Information
Taxon OID	3300027689 Open in IMG/M
Scaffold ID	Ga0209551_1000118 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027689 Open in IMG/M

Scaffold ID

Ga0209551_1000118 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25124
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (79.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25124

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (79.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009531	Metagenome / Metatranscriptome	316	Y
F010684	Metagenome / Metatranscriptome	300	Y
F015600	Metagenome / Metatranscriptome	253	Y
F020910	Metagenome / Metatranscriptome	221	Y
F035304	Metagenome / Metatranscriptome	172	Y
F084234	Metagenome / Metatranscriptome	112	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209551_100011813	F010684	AGGAG	MNEYKVEIIFEPTGDYMTFRYEAESDNEADLCNEILNQLSIVSWKEEE
Ga0209551_100011816	F015600	AGGA	MNTTLEPRLQKLIDMGESGTDILHGELKNLMLEAETDYIEIETEEREGGYSDAMLSMERTRAEGRMDALVEVYALTYQLAFAISDRIKNNG
Ga0209551_100011817	F035304	N/A	MDLNTLKEYIKITIISMEQDLENEDGADSIVPYLEGALHISRHYLSVVEDIL
Ga0209551_100011818	F020910	AGG	MFIMWSRYTFVCDPDECDALVEFTVRDDFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN
Ga0209551_100011822	F009531	AGG	MTKQVAIYEMNYSCSPGGIDCWEATIQGYGESTTASDFKTAGEALNWVLDRHPDEMLELVVTSHPAYEKEYV
Ga0209551_100011837	F099300	AGGA	MGVMKELHLEITTCDLCYGTGWLHFGNSLDYDTENCDCNPHQLFITKENY
Ga0209551_100011848	F084234	AGGAG	MFDFISAPFEWFANVVQYSLIFMAIMMLVLTIGAVVAIPLGLKLLGVAFAKTIVVETSKVFRDLGITSIDLKQSKDTQKMKSYLDRKVVPILSKSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209551_1000118

Overview

Ecosystem & Geography

Associated Families

Sequences