Scaffold Ga0209710_1022546

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1022546
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3261
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F067117	Metagenome	126	N
F092711	Metagenome	107	N
F095608	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_102254610	F028622	N/A	MKDEDKTYENEVKHTLDDRGSLDLTLMIDNLNIKVKNLSGLEKIHKETNGDLRVHILKLDKEIYQLKKNMAFQKETNEMDIIQKDNEIGRLIKKITEK
Ga0209710_10225462	F095608	N/A	MRYKFKILDGDTGVMTETENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYVCHSIDKGKK
Ga0209710_10225464	F067117	N/A	MNTKDKEKMKMLQIPVTEKQFDTLKDKADKEKRSLPNSILIILEPYMKAK
Ga0209710_10225468	F092711	GGAG	MVQLEVTLTGRSKSFTADTLQDCAKQFFDEFGEASKEVVKCQTFEVNNPAEFLIVGGNESCLGYLKQMQQGAIDDK
Ga0209710_10225469	F020603	AGGAG	MINRLLLIIFCLFLSNCSTYKPLINPETSKDKYNGDVIAGNYWKDLHACRYIHEKNTGIVPKVLHLSDEKMFVKKCMENYGYSILR