NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1005481

Scaffold Ga0209710_1005481


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1005481 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7975
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F056896Metagenome / Metatranscriptome137N
F061271Metagenome / Metatranscriptome132N
F062159Metagenome / Metatranscriptome131Y
F076593Metagenome / Metatranscriptome118N
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100548113F005129N/AMNYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGIKTQWGADINETELEFYVNDKRCKYVGFKELYIQLYGNSFVTWEADLIRQIEEVVAKRIAKEYPGCDVNF
Ga0209710_100548114F092077N/AMDKELSPLQRSFDRINELIPHSHDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0209710_100548115F061271N/AMIQELDKVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKESWCVSDEGMTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISEYEYNNCAIGNSKKCYKTNTTADR
Ga0209710_100548118F062159N/AMKDLNEYVEIDWSGVCEDYDLKHGDISPHQTFEIDYALNKINEVLNEFIIQNR
Ga0209710_100548121F056896N/AMWSNCCGAEPSYLSDELCGDCLEHAVFDDEDEDTGETCRNGKEWSKCKCC
Ga0209710_10054819F076593N/AMELTEHQKNELDAVADSVSHYIADHLRETINWQMPDSLVDELQEDQFIEAMGYAYEKVLQLITE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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