Scaffold Ga0209710

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1002985 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027687 Open in IMG/M

Scaffold ID

Ga0209710_1002985 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11568
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (6.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11568

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (6.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F019836	Metagenome / Metatranscriptome	227	Y
F045764	Metagenome / Metatranscriptome	152	N
F061271	Metagenome / Metatranscriptome	132	N
F062159	Metagenome / Metatranscriptome	131	Y
F076593	Metagenome / Metatranscriptome	118	N
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10029851	F019836	N/A	MQKAELELPVKQFHRLYDLLGDILDHDSESGYFNMDNLDIDFLEDIRTELFNQIPDEKTYTDYALTGRSSNPSILAGKLYKIVDHTSKYGFKLEVEDGEVIYCLVEKCAFLNGRDWTIINVED
Ga0209710_100298512	F076593	N/A	MILTEHQKNELDAVADSVSHYIEDHLRETINWQMPDSLVDELQEDQFMEAMDYAYEKVLKLISE
Ga0209710_100298513	F007892	GGA	MGRLIEISPQQDVVNKINAKADFTHNINNTRLERYTVSTQSILKTANPSLFSKNTWQIVDDAFNSDHELFGGWLSEDDIYFLDYGLSVSDLKEAMKIAKFNEQLAIYDNVSQKVINVAD
Ga0209710_10029852	F045764	AGAAG	MKLTDEEIKEIADRMDDLMWEGFHDIVYDVYLQREDSFLDEEISDSDVIKVRKELNKYI
Ga0209710_10029853	F062159	N/A	MKNLVSYIEIDWSGVCSDFDLEYGDISPEQTFEIDHALHKINKVLNEFIIQNR
Ga0209710_10029855	F061271	N/A	MIQELDKVVHQWCDDNDRWMYIEYDTDGKVMGLNFMQGDEYECFKKSWCVSDVGMTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNATKCYANKCCKAISGR
Ga0209710_10029856	F092077	N/A	MTEELSPLKRSFERINELIPHSHDVLLRCSLYEMCVELTNKSFSEGINTKY
Ga0209710_10029857	F005129	N/A	MKYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGIKTEWGADINETEMEFYVNDKRCKYVGFKELYTQLYGNSFNTWEVDLTRQIEEVVAKRIAKEYPGCDVNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209710_1002985

Overview

Ecosystem & Geography

Associated Families

Sequences