Scaffold Ga0209710_1000818

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1000818
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26161
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043629	Metagenome	156	Y
F062184	Metagenome / Metatranscriptome	131	Y
F079229	Metagenome	116	Y
F081777	Metagenome	114	N
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100081816	F062184	GGAG	MSSTFEEVKEQILNKYDVDFLCELLGITSESLVDRYEDLVMKNLDIFTEEDEAND
Ga0209710_10008184	F081777	GAGG	MKDYKHKRLQASCEVRKQERLDKYLSIGLSALGGLIGVFCIIYATHVALN
Ga0209710_10008186	F079229	AGG	MSTLLTKLDDIQYDFNFQFAIALSDPELVVASLRDHGVMIDIAKANELIVNLKKGGASHEQK
Ga0209710_10008187	F092731	AGGAGG	MSKSKLSTQATEVYNTLLELNWSEPYLTLEHIQATTGLGRSKLAPVLAELIGDSKVLHGNEEALGELIETFTPKVKGVAYGYPLDYYTFDEWIEHKLKNEVTK
Ga0209710_10008189	F043629	GGA	MANSTINIEIDVLNETVMLEIEVVWHMSVAGELTIDDFYGYHFNYKTGEYTRIPEWLHKIIETTQLLEEEYTDLIDLNCDERTY