Scaffold Ga0208991_1185936

Overview

Basic Information

• Taxon OID: 3300027681
• Scaffold ID: Ga0208991_1185936
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 606
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005262	Metagenome / Metatranscriptome	406	Y
F104886	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208991_11859361	F104886	GGCGG	MGVLPHGGDNLRGDPWDFRIPRTGDRDLAFRGWLLSHAEERDASAGVTYGVDIDLYLTIRLRLVSHLCRWSLREGEGLTED
Ga0208991_11859362	F005262	N/A	QAPPGHVYWAGFYQALPGKAAAYNKALTDIADPVLDELVRRKLMVSHVQLAQYSGAGENTNLVILEFPNWAALDSYEAKLDEASQAVLRKPWSEAAAGFVELRRLLRIEIYTPAGRRP