Scaffold Ga0209118

Basic Information
Taxon OID	3300027674 Open in IMG/M
Scaffold ID	Ga0209118_1000006 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027674 Open in IMG/M

Scaffold ID

Ga0209118_1000006 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	255193
Total Scaffold Genes	236 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	186 (78.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

255193

Total Scaffold Genes

236 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

186 (78.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F000173	Metagenome / Metatranscriptome	1777	Y
F001983	Metagenome / Metatranscriptome	608	Y
F009172	Metagenome / Metatranscriptome	322	Y
F010962	Metagenome / Metatranscriptome	297	Y
F021504	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_1000006155	F000043	AGG	MLYQLGWATLPGLRGLSVSEFRATPTVNPDNERGVAVEYASERDRDEFLRHLEQHFAARRFTNAADAFDTVKAFVVERAAKR
Ga0209118_100000616	F010962	AGGGGG	MARCPVCEHDVATPFFLNVDRWRWLACPNCAARLERKNPRFVVALMPLWVALIAAGGQGHRFTVIAEVLMVGIFVVILVEFMHPRLQLRKLPPKPEIRLDINGSSN
Ga0209118_10000062	F000173	GGAGG	MKTFEVQFRYRDRNEGTAESTVKVEASSLPGAVGKATRQFVKGLDRKQRFDMNKNGLEITAKSISTTTEAQASAEAAAS
Ga0209118_10000063	F001983	AGGA	MTRKNTWARLVVAVVLSLPLTACKDTKTLQENEQLKAQVAELQKENGQLGNDLETMTAARDTLTKENEALKAESKARKTKHSGTKAASRKRRRN
Ga0209118_100000636	F009172	GAG	MAEDNKKSTEKPAAPGTRKPYTKPNATSEPIYETLALACGKLPGQGGLCNAAPRRS
Ga0209118_100000637	F021504	GGAGG	MGRIRLAVLIFASLGLLLCVSQEAAAQSSNRLGKRNEERGDSTSDARLRPRRPQPRPRGPEIFYCETPDTSCRTTQDTFAIADLRDLFVFVVWPGVSGQHVQTVEFLLPGGSIYSSKKTRFSIGGASRVAAMAPAFKNEVSPVPPAPHLIAEANKVHPEGIPTLLMKSRGDSSVLTVLPVGGTYITQRNLSGTWRVRVLLDDRFALESEFTLVPREPPPAAKAEEKAER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209118_1000006

Overview

Ecosystem & Geography

Associated Families

Sequences