Scaffold Ga0209009_1000004

Overview

Basic Information

• Taxon OID: 3300027667
• Scaffold ID: Ga0209009_1000004
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 164700
• Total Scaffold Genes: 182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (60.99%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004945	Metagenome / Metatranscriptome	418	Y
F008403	Metagenome	334	Y
F043158	Metagenome	157	Y
F045957	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209009_1000004119	F043158	AGGA	MDARDAWRTTLPAFAAVVIITVFVLLSISGYLILSAS
Ga0209009_100000414	F008403	GAGG	MLEINELRRRIAKLKFERASVTIIEELEAQLRILRSIYDSATALFAAGETDSRLQASFRDRQLGTWTFENVYFYVYEQAVALEPDGHDLATLIWHYDYTAPLLNSVAAK
Ga0209009_100000431	F004945	N/A	MTLVDWAVIILGGWTVAMIGAGLIMALRPGEGALEYDAPTVEPLVLRQTAGVMPSRAWGFRPAVHHSRYDPAPWQVQPPRSDDESLDNVDRATDIKRDLGSEHPPWERLDRQGL
Ga0209009_100000478	F045957	GGA	VPVTERELLAAAAQAAGLRLTAQDVADLLPAWKRYLGLVEQLRAAMPPEDWDDRG