Scaffold Ga0209009_1000003

Overview

Basic Information

• Taxon OID: 3300027667
• Scaffold ID: Ga0209009_1000003
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 175882
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (63.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004660	Metagenome	429	Y
F005646	Metagenome / Metatranscriptome	394	Y
F011179	Metagenome	294	Y
F013952	Metagenome	267	Y
F018052	Metagenome	237	Y
F020419	Metagenome / Metatranscriptome	224	N
F027586	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209009_1000003112	F011179	GAGG	MSGNPGPASDEDELRLAFGRAIGFTVAAVALLLGGGVVVILVAAIFFRFMFGG
Ga0209009_100000323	F013952	GGA	MRRFRPRWLAALLGGIVLPFDPVLGMVMLMVGLWRPKPNPAPKVLP
Ga0209009_100000330	F018052	N/A	MARLITIGVAIVSCLLVWKSGAINSVLPGQEPAPAPTLDAGPVISKSADAMQGLKSVHLSLAGNLVLNGLAGVKITGSGDLIYPHKENLSLQMEVPSSDGYVIVAVNERIENGHEYIQIPSQGPAWKDVTGNSKGQIAPGMDPIANLEFAHAFRASDDLGDITMDNIDVHHFSLTVDPGKYVEQLKADPSSGVTPADEAALTNAGIQVEVWISASDRYMHQMKIDMSTTQFTWSVTYHFSSFVAGGGTTAA
Ga0209009_100000337	F004660	N/A	MAMAEPSNLEQAPDDELARRVREIMAEMTPLEEALGRLRAQIQQVVSEQKKRERSQHLKARMQVRTTVAQGQMPTLQQVAESSNDLVPPDASLAGLRFFRDSGTEIGLGYATGREPTVWMTNGSSTAAVKTIAEIRWRFLEGWDFGTAAHPGVRIHIPNSRTEKILGPSEVFVRL
Ga0209009_10000034	F027586	AGGAG	MDATTVIAIISCAIVLVGWLVLPHSATTVKPVVVSEEERAPVSVSA
Ga0209009_100000385	F005646	GAGG	MSRAFVKEGDSTTSGSLVDRFYQGLLDLSDPARALVGKRQEQAWLTSQPKVEAARRQALDALGADSYREIFDAAAERAGDPPQTPTWWAAGDAATGLAARRHLDPDEFALLVGPLGVALPWLKDAANQS
Ga0209009_100000399	F020419	AGG	MARSQAGRRVDWFAAGLGMVLAVVIQLVGGTLLFGSHRGQLVSQGLLTFAALLAGGTLAGFIGPAGGAVWNGVIVAVGFIIVEELAGAVGPIGPIGSAGLDTLGLVVDDVLVLSGGTIGGVIASVARRERTGSGNDSPSHRVR