Scaffold Ga0208975_1023961

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1023961
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1983
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061793	Metagenome	131	N
F088784	Metagenome / Metatranscriptome	109	Y
F101020	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10239611	F088784	N/A	MKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCK
Ga0208975_10239614	F061793	GGTGG	MRYRYKFIVCYPNSTSPVASFKTLKAARAHSDKIVEDQMFEHQFFGNKVYLPFIKRELILKGNTL
Ga0208975_10239617	F101020	AGGAGG	MNQIIKTSGGYMVLMSNEDYACDAQGDNTWDTFNEAREVLDTLTVTKQEHTARIFGQHYAYVHPSYTKHWERKEIASTFYTPKSKVWYAFIRGMERHEQFPVIAKGAKADIRGVLKNLTESADKYIEDGKWIEALSK